EY692426

Overview
NameEY692426
Unique NameEY692426
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1004
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692426 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.826e-17
Identity = 42/60 (70.00%), Postives = 51/60 (85.00%), Query Frame = 3
Query:   18 FALVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVLKKVLSRIPKGALKKK 197
            F    VLL T+PV+YEKYEDK+D++GEKA  EIKKQYAV DEKVL+KV+S+IP+GAL KK
Sbjct:  196 FYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQYAVLDEKVLRKVISKIPRGALNKK 255          
BLAST of EY692426 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.187e-15
Identity = 42/59 (71.19%), Postives = 48/59 (81.36%), Query Frame = 3
Query:   33 VLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVLKKVLSRIPKGA---LKKKD 200
            VLL T+PV+YEKYEDK+D FGEKA  EIKKQY  FD KVL KV+S+IPKGA   +KKKD
Sbjct:  197 VLLFTIPVLYEKYEDKVDDFGEKAMREIKKQYVEFDVKVLSKVMSKIPKGAFAFIKKKD 255          
BLAST of EY692426 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.575e-12
Identity = 37/58 (63.79%), Postives = 43/58 (74.14%), Query Frame = 3
Query:   24 LVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVLKKVLSRIPKGALKKK 197
            +  VLL TVP+ Y+KYEDK+D  GEKA IE+KKQYAV DE    KVLS+IP G LK K
Sbjct:  219 IALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAVLDE----KVLSKIPLGPLKNK 272          
BLAST of EY692426 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.963e-12
Identity = 35/58 (60.34%), Postives = 43/58 (74.14%), Query Frame = 3
Query:   24 LVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVLKKVLSRIPKGALKKK 197
            +  VLL TVP+ Y+KYEDK+DS+GEKA  E+KKQYAV D     KV S+IP+G LK K
Sbjct:  215 IALVLLFTVPLFYDKYEDKVDSYGEKAMAELKKQYAVLD----AKVFSKIPRGPLKDK 268          
BLAST of EY692426 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.026e-11
Identity = 34/58 (58.62%), Postives = 44/58 (75.86%), Query Frame = 3
Query:   24 LVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVLKKVLSRIPKGALKKK 197
            + FV+LHTVP++YEK+EDK+D   EKA  E++KQY VFDE    KVLS+IP  +LK K
Sbjct:  198 ICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVFDE----KVLSKIPIASLKAK 251          
The following BLAST results are available for this feature:
BLAST of EY692426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RTNLD_ARATH2.826e-1770.00Reticulon-like protein B4 OS=Arabidopsis thaliana ... [more]
RTNLC_ARATH1.187e-1571.19Reticulon-like protein B3 OS=Arabidopsis thaliana ... [more]
RTNLA_ARATH3.575e-1263.79Reticulon-like protein B1 OS=Arabidopsis thaliana ... [more]
RTNLB_ARATH7.963e-1260.34Reticulon-like protein B2 OS=Arabidopsis thaliana ... [more]
RTNLE_ARATH3.026e-1158.62Reticulon-like protein B5 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-071-D09-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692426 ID=EY692426; Name=EY692426; organism=Citrus sinensis; type=EST; length=1004bp
ATCTTTTGTATGGTTCTTTTGCCCTTGTATTTGTTTTGCTACACACCGTG
CCCGTGATTTATGAGAAGTACGAGGACAAGATTGATTCATTTGGTGAGAA
GGCAACGATTGAGATCAAGAAGCAATATGCAGTCTTTGATGAAAAGGTTT
TGAAGAAGGTTTTGAGTCGAATTCCCAAAGGTGCATTGAAGAAGAAGGAT
TAGAGACAAGAATTGTTCAAGTTTTTGAGAAACCAATGTTCTGTGGGAGT
TGGTGTTGTAGTTTATTATCACCCATTGGAATCCTTGTTTCTGTTTTCTG
TTTTAGAGGTGTTTGAGCGGACACAAATTTAAATTAAATAAATACAATTT
GCATTGATAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAAAA
AAAANNAAAAAAAAAGGGGAGGANAAAAAAAGAAAANAAGAGGTGAGAAA
AGGGGGATGGGGGGGGAGAAGGGTGTAGAAGGGGGGAGGAGAAGTAAAGA
GGGGGGGAGGGGGAATTAAAATATAAGAAAGGGAAAAAATATGTAGTGAA
GGGAGGTATTATATTAATGAGGGAATTTGTTTTTTTTATGTGTGGAGGGA
AAGAGAGATGGTGGGGGGTGTAGAAGATTATTTTAAAGGGAGGTGATGAT
TATAAGGGTGGAGTGGGGGAGGATTATTTAGTGTGGGGTTGTATATTAAG
TTTAGTGAATTTTTTGGTTTATTATTTTTTGTGTGAGGGTTTTTTGATGT
TGATTAATGATATGTTATTGGTGTACTGTGTTTTAGGTGTTTATTTTGAT
GTTTAAGGAAGGTTTAATTTGGGTGTATGATAAGGATGGTAGTGTAATNA
GGTTAGTGGTGTGGTAAATGTATAGATTTGAAAAGAAGAGAGATGTGGTG
ATAGAGTTGTATATTGGGATGGAGGGGTTGTGTTGAAAAAGGTAAGTAGA
GTGA
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