EY692423

Overview
NameEY692423
Unique NameEY692423
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length992
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692423 vs. ExPASy Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.279e-18
Identity = 40/56 (71.43%), Postives = 52/56 (92.86%), Query Frame = 2
Query:    5 KDHPKNNSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 172
            K+HP+N +V+AVGKA G KWK+MS+A+KAPYVAK+EKRKVEYEK+M+ YN++QAEG
Sbjct:   64 KEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEG 119          
BLAST of EY692423 vs. ExPASy Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.988e-15
Identity = 35/57 (61.40%), Postives = 48/57 (84.21%), Query Frame = 2
Query:    2 KKDHPKNNSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 172
            K+ HP N SVA VGKAGG+KWK ++ A+KAP+++KAEKRK EYEK+++ YN++QA G
Sbjct:   55 KEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAG 111          
BLAST of EY692423 vs. ExPASy Swiss-Prot
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.425e-13
Identity = 35/59 (59.32%), Postives = 46/59 (77.97%), Query Frame = 2
Query:    2 KKDHPKNNSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 178
            K+ +PKN SVAAVGKA G++WKS+SE+DKAPYVAKA K K+EY K +  YN+ ++   K
Sbjct:   60 KEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAK 118          
BLAST of EY692423 vs. ExPASy Swiss-Prot
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 9.233e-13
Identity = 34/53 (64.15%), Postives = 43/53 (81.13%), Query Frame = 2
Query:    2 KKDHPKNNSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 160
            KKDHP N SVAAVGKA GE+WKS+SE +KAPYV +A K+K EYE  ++ YN++
Sbjct:   64 KKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKK 116          
BLAST of EY692423 vs. ExPASy Swiss-Prot
Match: HMGL_WHEAT (HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.575e-12
Identity = 34/55 (61.82%), Postives = 44/55 (80.00%), Query Frame = 2
Query:    2 KKDHPKNNSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 166
            K+ +PKN SVAAVGKA GE+WKS+SE++KAPYVAKA K K EY K +  YN+ ++
Sbjct:   61 KQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYNKGES 115          
The following BLAST results are available for this feature:
BLAST of EY692423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
HMGL_SOYBN4.279e-1871.43HMG1/2-like protein OS=Glycine max PE=2 SV=1[more]
HMGL_IPONI1.988e-1561.40HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1[more]
MNB1B_MAIZE1.425e-1359.32DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=... [more]
HMGL_VICFA9.233e-1364.15HMG1/2-like protein OS=Vicia faba PE=2 SV=1[more]
HMGL_WHEAT1.575e-1261.82HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-071-D06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692423 ID=EY692423; Name=EY692423; organism=Citrus sinensis; type=EST; length=992bp
CAAGAAGGATCATCCTAAGAACAACTCTGTTGCTGCTGTTGGTAAAGCTG
GTGGTGAGAAATGGAAGTCAATGTCTGAAGCTGATAAAGCACCGTATGTT
GCTAAGGCAGAGAAGCGCAAGGTTGAGTATGAGAAGGATATGAAAAACTA
CAATAGGAGACAGGCGGAGGGAACTAAGCCGGAGGAAGAAGAGGAGTCTG
AGAAGTCTATGTCAGAGGTGAATGATGAGGATGATGATGAAGAAGGCAGT
GGCGAGGAGGATGATGATGAATAGAAGTTGAAGGAAGAAATTAGCATAGT
CATGTTAGGCTGTGACAATGTTTCAAACAACATATGTTAATGCTTTGTGC
TTCCATGTTAATTTTTTTGGATGCTTTCATCATCTTCATCATCATGTAAG
AGAATCATGTTGCTTCTCCCTCGACATTTTCTTATGCCTGCCTTTCGAAG
AATTAATAGCTGTAGGTGGGAGATTCACTGCTCTATATGTACTGTGTTCT
AAAGCTTAATGATTTAGCTAAGGCGTTCCATCGTTTGTAGAAAAATCCCA
TGTTTTTTGATGATGAATGGTGGTGATGGTTTTTTCTTATCTTTTGTAAT
GCTAAGGAAATTAGTTACATTTGCTATAGTTAATCTTTAACGCATTTGCA
TGGTTAGGTCCNANNNNNAAGANNANAANAAAAAAAAAAGAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGG
GGGCCGCCCCAAAAGGATCCAAGCTTTAACTACCCCGGGGATGGGGAACC
CTTAAACTCCTTTATTAGGGGGCCCCCTAAATTTTAATTTCCCCGGGGGC
CCGCCTTTTTTTCAAACCCCCGGGGGGGGGGGGGAAAACCCCTGGGGGGG
TTATCCCCCCTTTTTATTCCCCCCCTTGTGCACACACTTTCCCCCCCCTT
TTTCGCCCCGCGCGGGGGGGGGGAAAAAAAACACAAAAAAAA
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