EY692404

Overview
NameEY692404
Unique NameEY692404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length974
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY692404_ssr125 microsatellite EY692404_ssr125:125..134. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY692404 vs. ExPASy Swiss-Prot
Match: AP1_SINAL (Floral homeotic protein APETALA 1 OS=Sinapis alba GN=AP1 PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 8.908e-67
Identity = 122/147 (82.99%), Postives = 137/147 (93.20%), Query Frame = 1
Query:  166 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLM 606
            MGRGRVQLKRIENKINRQVTFSKRRAG LKKAHEISVLCDAEVA+++FSHKGKLFEYSTDSCMEKILERYERY+YAERQLIAP+ +   NW +E N LKAKI+LL++NQRHYLGEDL+++S K++Q LEQQLDTALKHIRSRKNQLM
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYERYSYAERQLIAPESDVNTNWSMEYNRLKAKIELLERNQRHYLGEDLQAMSSKELQNLEQQLDTALKHIRSRKNQLM 147          

HSP 2 Score: 23.0978 bits (48), Expect = 8.908e-67
Identity = 8/14 (57.14%), Postives = 14/14 (100.00%), Query Frame = 3
Query:  630 RKKEKSIEEQNNLL 671
            ++KEK+I+EQN++L
Sbjct:  155 QRKEKAIQEQNSML 168          
BLAST of EY692404 vs. ExPASy Swiss-Prot
Match: AP1_ARATH (Floral homeotic protein APETALA 1 OS=Arabidopsis thaliana GN=AP1 PE=1 SV=2)

HSP 1 Score: 251.521 bits (641), Expect = 1.162e-66
Identity = 121/147 (82.31%), Postives = 137/147 (93.20%), Query Frame = 1
Query:  166 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLM 606
            MGRGRVQLKRIENKINRQVTFSKRRAG LKKAHEISVLCDAEVA+++FSHKGKLFEYSTDSCMEKILERYERY+YAERQLIAP+ +   NW +E N LKAKI+LL++NQRHYLGEDL+++S K++Q LEQQLDTALKHIR+RKNQLM
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYERYSYAERQLIAPESDVNTNWSMEYNRLKAKIELLERNQRHYLGEDLQAMSPKELQNLEQQLDTALKHIRTRKNQLM 147          

HSP 2 Score: 24.2534 bits (51), Expect = 1.162e-66
Identity = 9/14 (64.29%), Postives = 14/14 (100.00%), Query Frame = 3
Query:  630 RKKEKSIEEQNNLL 671
            +KKEK+I+EQN++L
Sbjct:  155 QKKEKAIQEQNSML 168          
BLAST of EY692404 vs. ExPASy Swiss-Prot
Match: CAL_ARATH (Transcription factor CAULIFLOWER OS=Arabidopsis thaliana GN=CAL PE=1 SV=3)

HSP 1 Score: 241.121 bits (614), Expect = 7.239e-63
Identity = 118/149 (79.19%), Postives = 136/149 (91.28%), Query Frame = 1
Query:  166 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDP--ESQRNWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLM 606
            MGRGRV+LKRIENKINRQVTFSKRR G LKKA EISVLCDAEV++I+FSHKGKLFEYS++SCMEK+LERYERY+YAERQLIAPD    +Q NW +E + LKAKI+LL++NQRHYLGE+LE +SLKD+Q LEQQL+TALKHIRSRKNQLM
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRTGLLKKAQEISVLCDAEVSLIVFSHKGKLFEYSSESCMEKVLERYERYSYAERQLIAPDSHVNAQTNWSMEYSRLKAKIELLERNQRHYLGEELEPMSLKDLQNLEQQLETALKHIRSRKNQLM 149          
BLAST of EY692404 vs. ExPASy Swiss-Prot
Match: AGL8_SOLLC (Agamous-like MADS-box protein AGL8 homolog OS=Solanum lycopersicum GN=TDR4 PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 3.718e-59
Identity = 110/147 (74.83%), Postives = 131/147 (89.12%), Query Frame = 1
Query:  166 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLM 606
            MGRGRVQLKRIENKINRQVTFSKRR+G LKKAHEISVLCDAEV +I+FS KGKLFEY+ DSCME+ILERYERY++AE+QL+  D  S  +W LE   LKA++++LQ+NQ+HY+GEDLESLS+K++Q LE QLD+ALKHIRSRKNQLM
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERILERYERYSFAEKQLVPTDHTSPVSWTLEHRKLKARLEVLQRNQKHYVGEDLESLSMKELQNLEHQLDSALKHIRSRKNQLM 147          
BLAST of EY692404 vs. ExPASy Swiss-Prot
Match: AGL8_SOLTU (Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 8.283e-59
Identity = 109/147 (74.15%), Postives = 131/147 (89.12%), Query Frame = 1
Query:  166 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLM 606
            MGRGRVQLKRIENKINRQVTFSKRR+G LKKAHEISVLCDAEV +I+FS KGKLFEY+ DSCME++LERYERY++AERQL+  D  S  +W LE   LKA++++LQ+NQ+HY+GEDLESL++K++Q LE QLD+ALKHIRSRKNQLM
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERLLERYERYSFAERQLVPTDHTSPGSWTLEHAKLKARLEVLQRNQKHYVGEDLESLNMKELQNLEHQLDSALKHIRSRKNQLM 147          
BLAST of EY692404 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSJ (MADS-box transcription factor 14 OS=Oryza sativa subsp. japonica GN=MADS14 PE=1 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 5.936e-57
Identity = 108/147 (73.47%), Postives = 132/147 (89.80%), Query Frame = 1
Query:  166 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLM 606
            MGRG+VQLKRIENKINRQVTFSKRR+G LKKA+EISVLCDAEVA+IIFS KGKL+EY+TDSCM+KILERYERY+YAE+ LI+ + ++Q NW  E   LKAK++ +QK Q+H +GEDLESL+LK++QQLEQQL+ +LKHIRSRK+QLM
Sbjct:    1 MGRGKVQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYATDSCMDKILERYERYSYAEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLM 147          
BLAST of EY692404 vs. ExPASy Swiss-Prot
Match: AGL8_ARATH (Agamous-like MADS-box protein AGL8 OS=Arabidopsis thaliana GN=AGL8 PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 5.936e-57
Identity = 106/147 (72.11%), Postives = 128/147 (87.07%), Query Frame = 1
Query:  166 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLM 606
            MGRGRVQLKRIENKINRQVTFSKRR+G LKKAHEISVLCDAEVA+I+FS KGKLFEYSTDSCME+ILERY+RY Y+++QL+  D     NW LE   LKA++++L+KN+R+++GEDL+SLSLK++Q LE QLD A+K IRSRKNQ M
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLFEYSTDSCMERILERYDRYLYSDKQLVGRDVSQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLDAAIKSIRSRKNQAM 147          
BLAST of EY692404 vs. ExPASy Swiss-Prot
Match: AGL8_SOLCO (Agamous-like MADS-box protein AGL8 homolog OS=Solanum commersonii GN=SCM1 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.727e-56
Identity = 106/147 (72.11%), Postives = 130/147 (88.44%), Query Frame = 1
Query:  166 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLM 606
            MGRGRVQLKRIENKINRQVTFSKRR+G LKKAHEISVLCDAEV +I+FS KGKLFEY+TDSCME++LERYERY++AE+QL+  D  S  +W LE   LKA++++LQ+N++ Y+GEDLESL++K++Q LE QL +ALKHIRSRKNQLM
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYATDSCMERLLERYERYSFAEKQLVPTDHTSPGSWTLENAKLKARLEVLQRNEKLYVGEDLESLNMKELQNLEHQLASALKHIRSRKNQLM 147          
BLAST of EY692404 vs. ExPASy Swiss-Prot
Match: AGL8_SINAL (Agamous-like MADS-box protein AGL8 homolog OS=Sinapis alba GN=AGL8 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 2.256e-56
Identity = 106/147 (72.11%), Postives = 127/147 (86.39%), Query Frame = 1
Query:  166 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLM 606
            MGRGRVQLKRIENKINRQVTFSKRR+G LKKAHEISVLCDAEVA++IFS KGKLFEYSTDSCMEKILERY+RY Y+++QL+  D     NW LE   LKA++++L+KN+R+++GEDL+SLSLK++Q LE QL  A+K IRSRKNQ M
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALVIFSSKGKLFEYSTDSCMEKILERYDRYLYSDKQLVGRDISQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLHAAIKSIRSRKNQAM 147          
BLAST of EY692404 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSI (MADS-box transcription factor 14 OS=Oryza sativa subsp. indica GN=MADS14 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 8.571e-56
Identity = 106/147 (72.11%), Postives = 131/147 (89.12%), Query Frame = 1
Query:  166 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLM 606
            MGRG+VQLKRIEN INRQVTFSKRR+G LKKA+EISVLCDAEVA+IIFS KGKL++Y+TDSCM+KILERYERY+YAE+ LI+ + ++Q NW  E   LKAK++ +QK Q+H +GEDLESL+LK++QQLEQQL+ +LKHIRSRK+QLM
Sbjct:    1 MGRGKVQLKRIENTINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYKYATDSCMDKILERYERYSYAEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLM 147          
The following BLAST results are available for this feature:
BLAST of EY692404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
AP1_SINAL8.908e-6782.99Floral homeotic protein APETALA 1 OS=Sinapis alba ... [more]
AP1_ARATH1.162e-6682.31Floral homeotic protein APETALA 1 OS=Arabidopsis t... [more]
CAL_ARATH7.239e-6379.19Transcription factor CAULIFLOWER OS=Arabidopsis th... [more]
AGL8_SOLLC3.718e-5974.83Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL8_SOLTU8.283e-5974.15Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
MAD14_ORYSJ5.936e-5773.47MADS-box transcription factor 14 OS=Oryza sativa s... [more]
AGL8_ARATH5.936e-5772.11Agamous-like MADS-box protein AGL8 OS=Arabidopsis ... [more]
AGL8_SOLCO1.727e-5672.11Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL8_SINAL2.256e-5672.11Agamous-like MADS-box protein AGL8 homolog OS=Sina... [more]
MAD14_ORYSI8.571e-5672.11MADS-box transcription factor 14 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-071-B06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692404 ID=EY692404; Name=EY692404; organism=Citrus sinensis; type=EST; length=974bp
AGAAATCCTTTTATGAGATATCCTATTTGGGTTTCTGTTTTTGGAGGGGC
TTTGGTTGTTGGGTTTCTTTGGGGGAAAGAGAAAAAAAAAAAGAATAGAA
ATTATCAAATAATCTGTGTGAGACAGAGAGAGAGTGAGACAGATCATACA
GAAGAATTCATAACAATGGGAAGAGGTAGGGTTCAGCTGAAGAGAATAGA
GAACAAGATCAATCGCCAAGTTACCTTTTCCAAACGGAGAGCTGGCTTCT
TGAAGAAAGCTCATGAGATCTCTGTGTTATGTGATGCTGAAGTTGCTGTT
ATTATCTTCTCTCACAAAGGGAAGCTCTTTGAATACTCCACTGACTCTTG
CATGGAAAAGATACTGGAACGCTATGAGAGGTACGCCTATGCTGAGAGAC
AGCTGATTGCCCCTGATCCTGAATCACAGCGTAACTGGCCCCTGGAGTGC
AACAACCTTAAGGCTAAGATAGATCTTCTGCAGAAAAACCAAAGGCACTA
TTTGGGAGAAGATTTAGAGTCTCTGTCCCTCAAAGACATCCAACAGTTGG
AGCAACAGCTGGACACCGCTCTCAAACACATCAGATCAAGAAAAAATCAA
CTCATGCAAGAGTCCCTCTCTGAGCTTTCAGAAAAAAAGAAAAGTCTATA
GAGGAACAAAACAACTTGCTGGTAAAGCAAATTAAGGAGAAAAAAAAGGC
TGCAGCGCAACAAGCTCCAGTGGGGGAAATCAATTCCAAACCAGGTTCCC
AACCCATTATCCTTTTCAACTCCCCGGCCACCTCCTTGCTTAAAATTGGG
GGGGGCCAACCCAGGAAAAAGGGATTCGGAAAAGAAGAAGAAACAAACTT
TAACCCCCCCCCCTTGAACCCCTAATGTTCCGGGGAACCCCTTGGGAAGG
CTTTTGCGGGGAAAAAAACGGGGGGAAAAAAAAAAAAAATTTTTGGGGGG
GGGGGGGGGGGGGGGGGGGTGACA
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