EY692394

Overview
NameEY692394
Unique NameEY692394
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length960
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY692394_ssr535 microsatellite EY692394_ssr535:535..549. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY692394 vs. ExPASy Swiss-Prot
Match: FDH_SOLTU (Formate dehydrogenase, mitochondrial OS=Solanum tuberosum GN=FDH1 PE=1 SV=2)

HSP 1 Score: 243.817 bits (621), Expect = 1.095e-63
Identity = 129/184 (70.11%), Postives = 138/184 (75.00%), Query Frame = 1
Query:  127 MAMKRVASSAINAXXXXXXXXXXXXXXXXXXXXXXKKIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLKXXXXXGLTVAEVTGSNVVSVAEDELKKNPLFLSVISYLE-HHQVINGE 675
            MAM RVAS+A  A                      KKIVGVFYK NEYA MNPNFLGC E   G+REWLESKGHQYIVT DKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAG+GSDH+DLK     GLTVAEVTGSN VSVAEDEL +  + + V ++L  HHQVINGE
Sbjct:    1 MAMSRVASTAARAITSPSSLVFTRELQASPGP---KKIVGVFYKANEYAEMNPNFLGCAENALGIREWLESKGHQYIVTPDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGIGSDHVDLKAAAAAGLTVAEVTGSNTVSVAEDELMR--ILILVRNFLPGHHQVINGE 179          
BLAST of EY692394 vs. ExPASy Swiss-Prot
Match: FDH_ARATH (Formate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=FDH1 PE=1 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.933e-60
Identity = 119/184 (64.67%), Postives = 139/184 (75.54%), Query Frame = 1
Query:  127 MAMKRVASSAINAXXXXXXXXXXXXXXXXXXXXXXKKIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLKXXXXXGLTVAEVTGSNVVSVAEDELKKNPLFLSVISYLE-HHQVINGE 675
            MAM++ A + I A                      KKIVGVFYK NEYA+ NPNFLGCVE   G+R+WLES+GHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNL+LLLTAG+GSDHIDL+     GLTVAEVTGSNVVSVAEDEL +  + + + +++  ++QV+ GE
Sbjct:    1 MAMRQAAKATIRACSSSSSSGYFARRQFNASSGDSKKIVGVFYKANEYATKNPNFLGCVENALGIRDWLESQGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMR--ILILMRNFVPGYNQVVKGE 182          
BLAST of EY692394 vs. ExPASy Swiss-Prot
Match: FDH2_ORYSJ (Formate dehydrogenase 2, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0486900 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 3.773e-56
Identity = 106/149 (71.14%), Postives = 124/149 (83.22%), Query Frame = 1
Query:  232 KKIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLKXXXXXGLTVAEVTGSNVVSVAEDELKKNPLFLSVISYLE-HHQVINGE 675
            KK+VGVFYKG EYA  NPNF+GCV+   G+R WLESKGH+YIVTDDKEG +CELEKHI D HVLI+TPFHPAY+TAERIKKAKNL+LLLTAGVGSDHIDL      GLTVAE+TGSN VSVAED+L +  + L + ++L  HHQ++NGE
Sbjct:   30 KKVVGVFYKGGEYADKNPNFVGCVDSALGIRGWLESKGHRYIVTDDKEGINCELEKHIEDAHVLITTPFHPAYITAERIKKAKNLELLLTAGVGSDHIDLPAAAAAGLTVAEITGSNTVSVAEDQLMR--ILLLLRNFLPGHHQIVNGE 176          
BLAST of EY692394 vs. ExPASy Swiss-Prot
Match: FDH1_ORYSJ (Formate dehydrogenase 1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0486800 PE=1 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 7.116e-55
Identity = 107/149 (71.81%), Postives = 124/149 (83.22%), Query Frame = 1
Query:  232 KKIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLKXXXXXGLTVAEVTGSNVVSVAEDELKKNPLFLSVISYLE-HHQVINGE 675
            KKIVGVFYKG EYA  NPNF+GCVEG  G+REWLESKGH YIVTDDKEG + ELEKHI D+HVLI+TPFHPAYV+AERIKKAKNL+LLLTAG+GSDHIDL      GLTVAEVTGSN VSVAEDEL +  + + + ++L  + QV++GE
Sbjct:   28 KKIVGVFYKGGEYADKNPNFVGCVEGALGIREWLESKGHHYIVTDDKEGLNSELEKHIEDMHVLITTPFHPAYVSAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNTVSVAEDELMR--ILILLRNFLPGYQQVVHGE 174          
BLAST of EY692394 vs. ExPASy Swiss-Prot
Match: FDH_HORVU (Formate dehydrogenase, mitochondrial OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 3.655e-51
Identity = 101/149 (67.79%), Postives = 119/149 (79.87%), Query Frame = 1
Query:  232 KKIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLKXXXXXGLTVAEVTGSNVVSVAEDELKKNPLFLSVISYLE-HHQVINGE 675
            KKIVGVFY+  EYA  NPNF+GCVEG  G+R+WLESKGH YIVTDDKEG + ELEKHI D+HVLI+TPFHPAYVTAE+IKKAK  +LLLTAG+GSDHIDL      GLTVA VTGSN VSVAEDEL +  + + + ++L  + QV+ GE
Sbjct:   29 KKIVGVFYQAGEYADKNPNFVGCVEGALGIRDWLESKGHHYIVTDDKEGFNSELEKHIEDMHVLITTPFHPAYVTAEKIKKAKTPELLLTAGIGSDHIDLPAAAAAGLTVARVTGSNTVSVAEDELMR--ILILLRNFLPGYQQVVKGE 175          
BLAST of EY692394 vs. ExPASy Swiss-Prot
Match: FDH_PICAN (Formate dehydrogenase OS=Pichia angusta GN=FMDH PE=3 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 2.227e-32
Identity = 75/149 (50.34%), Postives = 98/149 (65.77%), Query Frame = 1
Query:  235 KIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLKXXXXXG--LTVAEVTGSNVVSVAEDELKKNPLFLSVISYL-EHHQVING 672
            K+V V Y   ++A       GC E   G+R+WLE +GH  +VT DKEG +  LEK+I D  V+ISTPFHPAY+T ERI KAK L+LL+ AGVGSDHIDL      G  ++V EVTGSNVVSVAE  +    + + V +++  H Q+I+G
Sbjct:    2 KVVLVLYDAGKHAQDEERLYGCTENALGIRDWLEKQGHDVVVTSDKEGQNSVLEKNISDADVIISTPFHPAYITKERIDKAKKLKLLVVAGVGSDHIDLDYINQSGRDISVLEVTGSNVVSVAEHVVM--TMLVLVRNFVPAHEQIISG 148          
BLAST of EY692394 vs. ExPASy Swiss-Prot
Match: FDH_EMENI (Probable formate dehydrogenase OS=Emericella nidulans GN=aciA PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 7.165e-31
Identity = 69/146 (47.26%), Postives = 95/146 (65.07%), Query Frame = 1
Query:  247 VFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDL--KXXXXXGLTVAEVTGSNVVSVAEDELKKNPLFLSVISYL-EHHQVINGE 675
            V Y G  +A   P  LG  E   G+R+W+E +GH  + T DK+G +   +K + D  V+I+TPFHP Y+TAER+ KAKNL+L +TAG+GSDH+DL        G+TVAEVTGSNVVSVAE  +    + L V +++  H Q+ NG+
Sbjct:    2 VLYDGGSHAKDQPGLLGTTENELGIRKWIEEQGHTLVTTSDKDGENSTFDKELVDAEVIITTPFHPGYLTAERLAKAKNLKLAVTAGIGSDHVDLDAANKTNGGITVAEVTGSNVVSVAEHVVM--TILLLVRNFVPAHDQIRNGD 145          
BLAST of EY692394 vs. ExPASy Swiss-Prot
Match: FDH_NEUCR (Formate dehydrogenase OS=Neurospora crassa GN=fdh PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.556e-30
Identity = 67/152 (44.08%), Postives = 97/152 (63.82%), Query Frame = 1
Query:  235 KIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLK--XXXXXGLTVAEVTGSNVVSVAEDELKKNPLFLSVISYLEHHQVINGEMEW 684
            K++ V Y G ++    P  LG ++   GLR+WLE +GH  + T DK+G +   +K + D  ++I+TPFHP Y+TAER+ +AK L+L +TAG+GSDH+DL        G+TVAEVTGSNVVSVAE  L    + + V +++  H+ I  E  W
Sbjct:    3 KVLAVLYDGGKHGEEVPELLGTIQNELGLRKWLEDQGHTLVTTCDKDGENSTFDKELEDAEIIITTPFHPGYLTAERLARAKKLKLAVTAGIGSDHVDLNAANKTNGGITVAEVTGSNVVSVAEHVLM--TILVLVRNFVPAHEQIQ-EGRW 151          
BLAST of EY692394 vs. ExPASy Swiss-Prot
Match: FDH_PSESR (Formate dehydrogenase OS=Pseudomonas sp. (strain 101) PE=1 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 3.680e-27
Identity = 65/124 (52.42%), Postives = 85/124 (68.55%), Query Frame = 1
Query:  292 LGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLKXXXXXGLTVAEVTGSNVVSVAEDELKKNPLFLSVI-SYLEHHQ 660
            LG V G  GLR++LES GH  +VT DK+GPD   E+ + D  V+IS PF PAY+T ERI KAKNL+L LTAG+GSDH+DL+      +TVAEVT  N +SVAE  +    + LS++ +YL  H+
Sbjct:   51 LGSVSGELGLRKYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVM---MILSLVRNYLPSHE 171          
BLAST of EY692394 vs. ExPASy Swiss-Prot
Match: FDH2_YEAST (Formate dehydrogenase 2 OS=Saccharomyces cerevisiae GN=FDH2 PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 1.071e-26
Identity = 62/151 (41.06%), Postives = 97/151 (64.24%), Query Frame = 1
Query:  235 KIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEG-PDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLKXXXXXGLTVAEVTGSNVVSVAEDELKKNPLFLSVISYL-EHHQVINGEME 681
            K++ V Y+G ++A      LGC+E   G+R ++E +G++ + T DK+  P   +++ + D  ++I+TPF PAY++  RI +A NL+L +TAGVGSDH+DL+      +TV EVTGSNVVSVAE  +    + + + +Y   H Q INGE +
Sbjct:    5 KVLLVLYEGGKHAEEQEKLLGCIENELGIRNFIEEQGYELVTTIDKDPEPTSTVDRELKDAEIVITTPFFPAYISRNRIAEAPNLKLCVTAGVGSDHVDLEAANERKITVTEVTGSNVVSVAEHVMA--TILVLIRNYNGGHQQAINGEWD 153          
The following BLAST results are available for this feature:
BLAST of EY692394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
FDH_SOLTU1.095e-6370.11Formate dehydrogenase, mitochondrial OS=Solanum tu... [more]
FDH_ARATH1.933e-6064.67Formate dehydrogenase, mitochondrial OS=Arabidopsi... [more]
FDH2_ORYSJ3.773e-5671.14Formate dehydrogenase 2, mitochondrial OS=Oryza sa... [more]
FDH1_ORYSJ7.116e-5571.81Formate dehydrogenase 1, mitochondrial OS=Oryza sa... [more]
FDH_HORVU3.655e-5167.79Formate dehydrogenase, mitochondrial OS=Hordeum vu... [more]
FDH_PICAN2.227e-3250.34Formate dehydrogenase OS=Pichia angusta GN=FMDH PE... [more]
FDH_EMENI7.165e-3147.26Probable formate dehydrogenase OS=Emericella nidul... [more]
FDH_NEUCR3.556e-3044.08Formate dehydrogenase OS=Neurospora crassa GN=fdh ... [more]
FDH_PSESR3.680e-2752.42Formate dehydrogenase OS=Pseudomonas sp. (strain 1... [more]
FDH2_YEAST1.071e-2641.06Formate dehydrogenase 2 OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-071-A06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692394 ID=EY692394; Name=EY692394; organism=Citrus sinensis; type=EST; length=960bp
AATTAAATAAAAAGGCAAAGCCCACTTTCAAAGCCTGCCGTTAAAACTTG
AAAAGGTTTCCCCTACCTTAGCGCTGTGCTTTTGTGAGAACTCAGCAGTG
TGAGTGACAAATTATATAATTGGGAGATGGCCATGAAGAGAGTAGCTAGC
TCTGCAATTAACGCTTTTGCTTCGTCGGGATTTCTTCGTTCATCGTCGAG
ATTTTCTCGACACTATGCTTCTTCTGGAAGTAAGAAGATTGTTGGGGTGT
TCTACAAGGGCAATGAATACGCTTCAATGAATCCCAACTTTCTTGGTTGT
GTGGAGGGAGGCTGTGGCCTGCGTGAATGGCTGGAATCGAAAGGTCACCA
ATATATTGTCACTGATGACAAAGAGGGACCAGACTGTGAACTAGAGAAAC
ATATTCCTGATCTCCATGTCCTCATATCTACCCCCTTCCACCCTGCCTAT
GTTACGGCGGAAAGGATTAAGAAGGCCAAAAATTTGCAACTGCTTCTCAC
TGCTGGAGTTGGCTCTGATCATATTGATCTAAAAGCTGCTGCTGCTGCTG
GTTTAACTGTTGCTGAAGTTACTGGAAGCAATGTGGTTTCAGTTGCTGAG
GACGAGCTTAAGAAGAATCCCTTATTCTTGTCCGTAATTTCTTACCTGGA
ACACCATCAGGTTATCAATGGGGAAATGGAATGGTTGCCGGTGTTGCTTA
TAAAACTTAAGAATCATAAAAGGAAAAAAAAGGAGGAAACTGGTGGATGG
TGGGACACATTGGACGAAAAGTGGCACCAACAAACAGAAGCGATGCAATG
GAAATCCACAATTAAACCCGACCGAGAGGAAAAAGGAGGACGGCGATGAG
GACAGAACAAGCCGGGGGAAGAGAAGAACGACACGGAGAGATACACGACG
ACCTGGGCCTCCCGAGAATAGAAAAAGAAAATCTGGAACCACCAACGGCC
CACCCAGCCC
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