EY692193

Overview
NameEY692193
Unique NameEY692193
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length529
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY692193_ssr343 microsatellite EY692193_ssr343:343..354. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY692193 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 6.860e-42
Identity = 78/106 (73.58%), Postives = 93/106 (87.74%), Query Frame = 1
Query:   10 EFPEVDPRVRG-IRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTFEGKQFES 324
            ++  ++ R  G +RFT+DG  IFIS LI+NVAG+GD+ AVKIKGSRTGWLPMGRNWGQNWHINA+L+NQ LSFEVT+SD  TVTSYNV+PKNWN+GQTFEGKQFE+
Sbjct:  160 QYRRINCRKEGSMRFTVDGGGIFISVLITNVAGSGDIAAVKIKGSRTGWLPMGRNWGQNWHINADLRNQALSFEVTSSDRSTVTSYNVSPKNWNYGQTFEGKQFET 265          
BLAST of EY692193 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 1.694e-32
Identity = 59/93 (63.44%), Postives = 76/93 (81.72%), Query Frame = 1
Query:   40 GIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTFEGKQF 318
            G+RF + G   F++ LISNV GAGDV +VKIKG+ +GWL MGRNWGQ WHIN++ + QPLSFE+T+SDG T+T+YNV PK W+FG+T+ GKQF
Sbjct:  163 GVRFAVAGRSFFLTVLISNVGGAGDVRSVKIKGTESGWLSMGRNWGQIWHINSDFRGQPLSFELTSSDGKTLTNYNVVPKEWDFGKTYTGKQF 255          
BLAST of EY692193 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 8.405e-32
Identity = 62/96 (64.58%), Postives = 74/96 (77.08%), Query Frame = 1
Query:   31 RVRGIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTFEGKQF 318
            R  G+RFTI G   F+  LI+NVA  G+V AVK+KGSRTGW+PMGRNWGQNW  +A+L+ QPLSFEVT   G TV +Y+VAP +W F QTFEGKQF
Sbjct:  163 RAGGMRFTITGGASFLQVLITNVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRGQPLSFEVTGGRGRTVVAYSVAPPDWMFAQTFEGKQF 258          
BLAST of EY692193 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.704e-30
Identity = 66/105 (62.86%), Postives = 74/105 (70.48%), Query Frame = 1
Query:    4 FREFPEVDPRVRGIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTFEGKQF 318
            FR  P V  +  G+RFT++G   F   L++NVAGAGDV +V IKGSRTGW PM RNWGQNW  NA L  Q LSF+VT SDG TVTS NVA   W FGQTFEG QF
Sbjct:  144 FRRVPCV--KKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGWQFGQTFEGGQF 246          
BLAST of EY692193 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.704e-30
Identity = 66/105 (62.86%), Postives = 74/105 (70.48%), Query Frame = 1
Query:    4 FREFPEVDPRVRGIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTFEGKQF 318
            FR  P V  +  G+RFT++G   F   L++NVAGAGDV +V IKGSRTGW PM RNWGQNW  NA L  Q LSF+VT SDG TVTS NVA   W FGQTFEG QF
Sbjct:  144 FRRVPCV--KKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGWQFGQTFEGGQF 246          
BLAST of EY692193 vs. ExPASy Swiss-Prot
Match: EXP14_ARATH (Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.027e-29
Identity = 61/98 (62.24%), Postives = 71/98 (72.45%), Query Frame = 1
Query:   31 RVRGIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTFEGKQFES 324
            R  GIRFTI+G   F   LI+NVAGAGDV++V IKG+ T W  M RNWGQNW  NA L  Q LSF+VTTSDG TV S N  P+NW+FGQT+ GKQF +
Sbjct:  156 RKGGIRFTINGHSYFNLVLITNVAGAGDVISVSIKGTNTRWQSMSRNWGQNWQSNAKLDGQALSFKVTTSDGRTVISNNATPRNWSFGQTYTGKQFRA 253          
BLAST of EY692193 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 5.099e-29
Identity = 60/93 (64.52%), Postives = 65/93 (69.89%), Query Frame = 1
Query:   40 GIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTFEGKQF 318
            GIRFTI G   F   L++NV GAGDV AV +KGSR+GW  M  NWG NW   ANL  QPLSF VT SDG TVTS NVAP  W+FGQTF G QF
Sbjct:  156 GIRFTITGHSYFNLVLVTNVGGAGDVTAVSVKGSRSGWQAMSHNWGANWQNGANLDGQPLSFRVTASDGRTVTSDNVAPSGWSFGQTFSGGQF 248          
BLAST of EY692193 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 6.660e-29
Identity = 60/93 (64.52%), Postives = 66/93 (70.97%), Query Frame = 1
Query:   40 GIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTFEGKQF 318
            GIRFTI+G   F   L++NVAG GDV +V IKGS TGW PM RNWGQNW  N+ L  Q LSF+V  SDG TVTS NV P  W FGQTFEG QF
Sbjct:  159 GIRFTINGHSYFNLVLVTNVAGPGDVQSVSIKGSSTGWQPMSRNWGQNWQSNSYLDGQSLSFQVAVSDGRTVTSNNVVPAGWQFGQTFEGGQF 251          
BLAST of EY692193 vs. ExPASy Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.317e-28
Identity = 57/93 (61.29%), Postives = 67/93 (72.04%), Query Frame = 1
Query:   40 GIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTFEGKQF 318
            G+RFTI+G   F   LI+NVAGAGD+V   +KG+ TGW+PM RNWGQNW  N+ L  Q LSF VT SD  T TS+N AP  W+FGQTFEGK F
Sbjct:  170 GVRFTINGFRYFNLVLITNVAGAGDIVRASVKGTSTGWMPMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNAAPAGWHFGQTFEGKNF 262          
BLAST of EY692193 vs. ExPASy Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.638e-28
Identity = 58/93 (62.37%), Postives = 66/93 (70.97%), Query Frame = 1
Query:   40 GIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTFEGKQF 318
            GIRFTI+G   F   LI+NVAGAGD+V   +KGSRTGW+ + RNWGQNW  NA L  Q LSF VT SD  T TS+N+ P NW FGQTF GK F
Sbjct:  163 GIRFTINGHRYFNLVLITNVAGAGDIVRASVKGSRTGWMSLSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNMVPSNWQFGQTFVGKNF 255          
The following BLAST results are available for this feature:
BLAST of EY692193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EXP13_ARATH6.860e-4273.58Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=... [more]
EXP10_ORYSJ1.694e-3263.44Expansin-A10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP16_ORYSJ8.405e-3264.58Expansin-A16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA4_ORYSJ2.704e-3062.86Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ORYSI2.704e-3062.86Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4... [more]
EXP14_ARATH1.027e-2962.24Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=... [more]
EXP11_ORYSJ5.099e-2964.52Expansin-A11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA2_ORYSJ6.660e-2964.52Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA7_ORYSJ4.317e-2861.29Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ARATH5.638e-2862.37Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-098-A05-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692193 ID=EY692193; Name=EY692193; organism=Citrus sinensis; type=EST; length=529bp
GGGTTCCGGGAATTTCCCGAGGTCGACCCACGCGTCCGAGGCATTCGATT
TACGATTGATGGTTCGGATATCTTCATTTCAGCGTTGATCAGCAATGTAG
CAGGTGCTGGAGATGTAGTTGCAGTGAAGATCAAGGGTTCAAGAACCGGT
TGGCTTCCAATGGGTCGGAATTGGGGCCAAAACTGGCACATAAATGCCAA
TCTGAAAAATCAACCTCTCTCATTTGAGGTCACCACTAGTGATGGCCTCA
CGGTTACATCTTATAATGTTGCTCCTAAGAATTGGAACTTTGGGCAGACC
TTTGAAGGCAAACAATTTGAGTCTTAGATTAGCACCAATAGCTTAATTAA
TTAAGTATACAGAAGAAGGTTTTTTTTTTTTTTTTGGTTGTATTCGGGTG
GAAGGTGTATGGTGGGTTTTTCTATGGCTGGGAAGATACTATTCTTCAAG
ATGTAATGATTCAGTGAATTATTGTGATTTTTGTACCTCTGTTTTGTTCC
ACAAACAATATAAAAACAAACATGAGATA
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