EY692184

Overview
NameEY692184
Unique NameEY692184
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY692184_ssr665 microsatellite EY692184_ssr665:665..676. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY692184 vs. ExPASy Swiss-Prot
Match: SDR1_ARATH ((+)-neomenthol dehydrogenase OS=Arabidopsis thaliana GN=SDR1 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.814e-38
Identity = 93/197 (47.21%), Postives = 131/197 (66.50%), Query Frame = 3
Query:    9 LKNSNTLSFDNVIFHQLDVADPAAIHSVADFIRSHFGKLDILVNNAGITGISSDADTL-SGFIEEGVARGKM-TQTYESAEKCLQTNYLGAKRMCEALIPLLRLSDSARIVNVSSSLGKLMYVTHEWAKGMFSDAEKPHRRKSG*SIEPSNQMIS--KKVHRKLKGWPANATALIPIKSSYENSLHKGILAHESTKF 587
            LK    +S  +++FHQLDVADPA+I S+A+F+++ FGKLDILVNNAGI GI +DA+ L +G  +EG    ++ T+TYE  E+C++ NY G KRMCEA IPLL+LSDS RIVNVSSS+G+L  V +EWAKG+ SDAE     +     +  NQ+++  K+   K K W    +A +  K+S     +  +LA +  +F
Sbjct:   50 LKKELEISDQSLLFHQLDVADPASITSLAEFVKTQFGKLDILVNNAGIGGIITDAEALRAGAGKEGFKWDEIITETYELTEECIKINYYGPKRMCEAFIPLLKLSDSPRIVNVSSSMGQLKNVLNEWAKGILSDAENLTEERID---QVINQLLNDFKEGTVKEKNWAKFMSAYVVSKASLNG--YTRVLAKKHPEF 241          
BLAST of EY692184 vs. ExPASy Swiss-Prot
Match: SDR2_ARATH (Short-chain dehydrogenase/reductase 2 OS=Arabidopsis thaliana GN=SDR2 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 4.044e-36
Identity = 73/136 (53.68%), Postives = 104/136 (76.47%), Query Frame = 3
Query:    9 LKNSNTLSFDNVIFHQLDVADPAAIHSVADFIRSHFGKLDILVNNAGITGISSDADTL-SGFIEEGVA-RGKMTQTYESAEKCLQTNYLGAKRMCEALIPLLRLSDSARIVNVSSSLGKLMYVTHEWAKGMFSDAE 410
            LK    +S  +++FHQLDV+DP ++ S+A+F+++HFGKLDIL+NNAG+ G+ +D D L +G  +EG      +T+TYE AE+C++ NY G KRMCEA IPLL+LSDS RI+NVSS +G++  + +EWAKG+ SDAE
Sbjct:   50 LKKELEISDQSIVFHQLDVSDPVSVTSLAEFVKTHFGKLDILINNAGVGGVITDVDALRAGTGKEGFKWEETITETYELAEECIKINYYGPKRMCEAFIPLLQLSDSPRIINVSSFMGQVKNLVNEWAKGILSDAE 185          

HSP 2 Score: 21.1718 bits (43), Expect = 4.044e-36
Identity = 7/15 (46.67%), Postives = 13/15 (86.67%), Query Frame = 1
Query:  412 NLTEERVDEVLSPVI 456
            NLTE R+D+V++ ++
Sbjct:  186 NLTEVRIDQVINQLL 200          
BLAST of EY692184 vs. ExPASy Swiss-Prot
Match: SALR_PAPBR (Salutaridine reductase OS=Papaver bracteatum GN=SALR PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.793e-31
Identity = 89/211 (42.18%), Postives = 118/211 (55.92%), Query Frame = 3
Query:    9 LKNSNTLSFDNVIFHQLDVADP-AAIHSVADFIRSHFGKLDILVNNAGITGISSDADTLSGFI--------------EEGVARGKMTQTYESAEKCLQTNYLGAKRMCEALIPLLRLSDSARIVNVSSSLGKLMYVTHEWAKGMFSDAEKPHRRKSG*SIEPSNQMISKKVHRKL---KGWPANATALIPIKSSYENSLHKGILAHESTKF 587
            LKNSN    +NV+FHQLDV DP   + S+ADFI++ FGKLDILVNNAG+ G S DAD     I              E+  A+  M++TYE AE+CL+ NY G K + E L+PLL+LSDS RIVNVSSS G L YV++E A  +  D +     +    I+    M+ K     L    GWP+   A    K+    + +  +LA +  KF
Sbjct:   56 LKNSN---HENVVFHQLDVTDPITTMSSLADFIKARFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEEVVKIYEKPEAQELMSETYELAEECLKINYYGVKSVTEVLLPLLQLSDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEER----IDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKACL--NAYTRVLAKKIPKF 257          
BLAST of EY692184 vs. ExPASy Swiss-Prot
Match: MNR1_CAPAN ((+)-neomenthol dehydrogenase OS=Capsicum annuum GN=MNR1 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.088e-28
Identity = 75/195 (38.46%), Postives = 116/195 (59.49%), Query Frame = 3
Query:    9 LKNSNTLSFDNVIFHQLDVADPAAIHSVADFIRSHFGKLDILVNNAGITGISSDADT------LSGFI------EEGVARGKMTQT-------YESAEKCLQTNYLGAKRMCEALIPLLRLSDSARIVNVSSSLGKLMYVTHEWAKGMFSDAEKPHRRKSG*SIEPSNQMISKKVHRKLKGWPANATALIPIKSS 536
            LK  +  + ++++FHQLD+ DPA+I S+ + I++ FG+LDIL+NNAGI+G+  + D       L  +I      +E    G  T++       YE  ++C++TNY GAKRM EA IPLL+LS+S RIVNV+SS+GKL  + ++WA  +  DA+     K    +    +  ++K   + KGWP+  TA    K+S
Sbjct:   52 LKEESNFTDEHILFHQLDIMDPASISSLVNLIKTKFGRLDILINNAGISGVMVEGDVQVLKEILERYISIVFTEDENGEEGGWTKSGPGSVTNYELTKECIETNYYGAKRMTEAFIPLLQLSNSPRIVNVASSMGKLKLLCNKWAIEVLRDADSLTEEKVDQVVNEFLKDFTEK-STESKGWPSYFTAYKVSKAS 245          
BLAST of EY692184 vs. ExPASy Swiss-Prot
Match: CBR1_BOVIN (Carbonyl reductase [NADPH] 1 OS=Bos taurus GN=CBR1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.578e-11
Identity = 53/182 (29.12%), Postives = 87/182 (47.80%), Query Frame = 3
Query:   45 IFHQLDVADPAAIHSVADFIRSHFGKLDILVNNAGITGISSDADTLSGFIEEGVARGKMTQTYESAEKCLQTNYLGAKRMCEALIPLLRLSDSARIVNVSS--SLGKLMYVTHEWAKGMFSDAEKPHRRKSG*SIEPSNQMI---SKKVHRKLKGWPANATALIPIKSSYENSLHKGILAHE 575
            +FHQLD+ D  +I ++ DF+R  +G LD+LVNNAGI   ++D                 T  +  AE  ++TN+ G + +C  L+PL++     R+VNVSS  S+  L   + E  +   S+            +   N+ +      VHRK +GWP  A  +  I  +  + +H   L+ +
Sbjct:   58 LFHQLDIDDRQSIRALRDFLRKEYGGLDVLVNNAGIAFKTADT----------------TPFHIQAEVTMKTNFFGTRDVCTELLPLIK--PQGRVVNVSSFVSVNSLKKCSRELQQKFRSETITEEE-----LVGLMNKFVEDTKNGVHRK-EGWPDTAYGVTKIGVTVLSRIHARKLSEQ 215          
The following BLAST results are available for this feature:
BLAST of EY692184 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SDR1_ARATH9.814e-3847.21(+)-neomenthol dehydrogenase OS=Arabidopsis thalia... [more]
SDR2_ARATH4.044e-3653.68Short-chain dehydrogenase/reductase 2 OS=Arabidops... [more]
SALR_PAPBR1.793e-3142.18Salutaridine reductase OS=Papaver bracteatum GN=SA... [more]
MNR1_CAPAN1.088e-2838.46(+)-neomenthol dehydrogenase OS=Capsicum annuum GN... [more]
CBR1_BOVIN1.578e-1129.12Carbonyl reductase [NADPH] 1 OS=Bos taurus GN=CBR1... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-097-H08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692184 ID=EY692184; Name=EY692184; organism=Citrus sinensis; type=EST; length=932bp
TGAAGCTGTTGAAAAACTCAAACACTCTAAGCTTTGATAATGTGATCTTT
CATCAGCTTGATGTTGCAGACCCTGCTGCTATTCACTCTGTAGCTGATTT
CATTCGAAGTCATTTTGGAAAGCTTGATATTTTGGTAAATAATGCAGGGA
TTACTGGAATCAGTTCGGATGCTGATACTTTGTCAGGTTTTATTGAGGAA
GGTGTTGCAAGAGGAAAAATGACTCAAACTTATGAGTCAGCTGAAAAGTG
CCTGCAAACAAACTACTTGGGGGCCAAAAGAATGTGTGAAGCACTCATTC
CTCTCCTCCGGTTATCCGATTCAGCAAGAATTGTTAATGTATCCTCTTCC
TTGGGAAAGTTGATGTATGTAACACATGAATGGGCCAAAGGAATGTTTAG
TGATGCTGAGAAACCTCACAGAAGAAAGAGTGGATGAAGTATTGAGCCCA
GTAATCAAATGATTTCAAAGAAGGTTCACCGGAAACTAAAGGGATGGCCT
GCTAATGCTACTGCTTTAATACCTATCAAAAGCAGCTATGAAAATAGCCT
ACACAAAGGGATCCTGGCCCATGAATCCACCAAATTTTTTGGCTTCCATT
TGGAGTTTGGCCCTTGGCTATTGTTAAAAGCATAATTGACCTACCCACCC
TGGGTAAAATTACTAGAAAGAAAGAAAAGGGCCCAAAACACCCAATATTG
GGTGGAGTCCTGCTGGAAAACAGAGGAAGTCCATTACTGGGCCCAAAACT
ATTATCCCCCGGAATAAAAAGAAGCGCCCCTTTTTTTATGTTTCAGAAAA
AAAACTATCCCCACACACACTGGGAACATACCCCGAAGGGAGAAGAATAA
GGGCAACACAACTGTTTCGTGAGGTATCAAGAAATATAATATATGAAGCG
AGAACAATAATATAAACTCACCACTTAAAGGA
back to top