EY692172

Overview
NameEY692172
Unique NameEY692172
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length971
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692172 vs. ExPASy Swiss-Prot
Match: DCE_PETHY (Glutamate decarboxylase OS=Petunia hybrida GN=GAD PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.199e-33
Identity = 76/116 (65.52%), Postives = 89/116 (76.72%), Query Frame = 2
Query:    2 HDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELDSLPSKV---LVPASEQNGRNG----KKTEIETQREVTTYWRKFVSERKANNKNKIC 328
            H+EFE++E LRRFGWIVPAYTMP +AQHITVLRVVIREDFSRTLAERLV DI KVLHELD+LP++V   L  A EQ   NG    KKT+ E Q E+ T W+KFV E+K    N++C
Sbjct:  386 HNEFEISETLRRFGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVRDIEKVLHELDTLPARVNAKLAVAEEQAAANGSEVHKKTDSEVQLEMITAWKKFVEEKK-KKTNRVC 500          
BLAST of EY692172 vs. ExPASy Swiss-Prot
Match: DCE2_ARATH (Glutamate decarboxylase 2 OS=Arabidopsis thaliana GN=GAD2 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 7.769e-33
Identity = 76/111 (68.47%), Postives = 85/111 (76.58%), Query Frame = 2
Query:    2 HDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELDSLPSKVLVPASEQNGRNG-------KKTEIETQREVTTYWRKFVSERKANN 313
            H+EFE++E+LRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLV DI+KVLHELD+LPSK+    S++ G  G       KK E E   EV   WRKFV ERK  N
Sbjct:  385 HNEFEISEMLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVADISKVLHELDTLPSKI----SKKMGIEGIAENVKEKKMEKEILMEVIVGWRKFVKERKKMN 491          
BLAST of EY692172 vs. ExPASy Swiss-Prot
Match: DCE1_ARATH (Glutamate decarboxylase 1 OS=Arabidopsis thaliana GN=GAD1 PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 1.240e-30
Identity = 68/111 (61.26%), Postives = 86/111 (77.48%), Query Frame = 2
Query:    2 HDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELDSLPSKVL------VPASEQNGRN----GKKTEIETQREVTTYWRKFVSERK 304
            H EFE++++LRR+GWIVPAYTMP +AQHITVLRVVIREDFSRTLAERLV+DI KV+ ELD LPS+V+         SE N  N     KK++I+ QR++ T W+KFV++RK
Sbjct:  386 HTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMRELDELPSRVIHKISLGQEKSESNSDNLMVTVKKSDIDKQRDIITGWKKFVADRK 496          
BLAST of EY692172 vs. ExPASy Swiss-Prot
Match: DCE_SOLLC (Glutamate decarboxylase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.624e-22
Identity = 58/108 (53.70%), Postives = 71/108 (65.74%), Query Frame = 2
Query:   11 FEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELDSLPSK-----VLVPASEQNGRNG------KKTEIETQREVTTYWRKFVSER 301
            FEV+E LRRFGWIVPAYTMP DA+HI VLRVVIREDFS +LAERLV DI K+L ELD+ P +     V V A E     G          +ETQ+++  +WRK   ++
Sbjct:  390 FEVSEHLRRFGWIVPAYTMPPDAEHIAVLRVVIREDFSHSLAERLVSDIEKILSELDTQPPRLPTKAVRVTAEEVRDDKGDGLHHFHMDTVETQKDIIKHWRKIAGKK 497          
The following BLAST results are available for this feature:
BLAST of EY692172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
DCE_PETHY1.199e-3365.52Glutamate decarboxylase OS=Petunia hybrida GN=GAD ... [more]
DCE2_ARATH7.769e-3368.47Glutamate decarboxylase 2 OS=Arabidopsis thaliana ... [more]
DCE1_ARATH1.240e-3061.26Glutamate decarboxylase 1 OS=Arabidopsis thaliana ... [more]
DCE_SOLLC1.624e-2253.70Glutamate decarboxylase OS=Solanum lycopersicum PE... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-097-G06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692172 ID=EY692172; Name=EY692172; organism=Citrus sinensis; type=EST; length=971bp
CCACGATGAATTCGAAGTGGCCGAATTGCTGCGCCGTTTTGGTTGGATTG
TGCCAGCGTACACCATGCCCGCTGACGCTCAGCACATCACCGTGTTACGT
GTCGTCATCAGGGAAGACTTCTCTCGCACACTTGCCGAGCGCCTTGTGCT
CGACATCACAAAAGTGCTTCATGAGCTTGATTCGCTTCCTTCAAAAGTGC
TTGTACCTGCTTCTGAACAGAATGGAAGGAATGGAAAGAAGACTGAAATT
GAGACTCAGAGGGAAGTCACTACTTACTGGAGGAAATTCGTCTCCGAAAG
GAAAGCTAATAACAAGAATAAAATTTGTTAAGACACACCCCCCCCCCCCC
ACCAAAAAAAAAAAAAGAAAGAAAAAAAACCTGTAAAGCTGCATATTTTT
TTAATAGACTATTCTTTCTTTCNNAANGGAAAAAAAAAAAGAGAAAAAAA
GAAAATAATAGAAAAAATAAAATAGTTTGAAGAGTGCAAAAAATAATAAA
GAGTGTGATGCCTGGGTGGCAAGCCGTGGAGCATTCTAATGTTAGTAAGG
TGTCGGGCCTCGGGCGCGCGAATGGCACCTCCACTCGGCAAATTAGGAAA
GGTAGATCACAAAACATATAATTTTGAAGAGCGATGACCTCGCCGGAACT
TTTGTGCTGTGACATCCAGGTGACCTGATTCCGACCGCATCCTTTTTATT
CACACCCGGTGTCAGGTAGATGAGACAGCCTCCAAACAGCACGCATTATG
TCTCAACCAACGGAATCTGGCAACCAATGCACGCCTTCGCTAAGATGGAT
TGGGCCTGGCAAACAGAAGTGCAGGGGCAGGTAGAGGCGTATGTTTGAGA
ATTCGCGATACTACCTTCCCCCCTCACTAATCAATGATCTTTTCACTGAG
ACTTTACGAATCAAGTAATACGTCGATAAATGGTCGCTGGCAACTAATGC
CACCAGAGGTCGGACTAGAAC
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