EY692139

Overview
NameEY692139
Unique NameEY692139
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length853
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY692139_ssr538 microsatellite EY692139_ssr538:538..549. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4377 contig Csv1_Contig4377:221..1072. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY692139 vs. ExPASy Swiss-Prot
Match: COQ4_ARATH (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Arabidopsis thaliana GN=At2g03690 PE=2 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 2.538e-74
Identity = 125/156 (80.13%), Postives = 140/156 (89.74%), Query Frame = 3
Query:    3 RVIYEKVGHAWDLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFPWAIRAGMQSTDLMCVYYEQHFHEDLEDLRKKWGIVPSPAAP 470
            RV+ E+VGHAWDLP NTFGAAYA FMGSRNFSPDDRPPVRFM+TDELAYVA RAREVHD WHTLFGLPTNLIGES+LKVIEF+QMYLPMC LSVIGG+ RF+EKQR +F +HY PWA+RAG Q TDLMCVYYE+HF EDLE +R+KWGI+P+P  P
Sbjct:   70 RVVSEQVGHAWDLPENTFGAAYAKFMGSRNFSPDDRPPVRFMETDELAYVATRAREVHDLWHTLFGLPTNLIGESSLKVIEFEQMYLPMCMLSVIGGTVRFNEKQRSMFLKHYLPWAVRAGRQCTDLMCVYYERHFSEDLEQVRRKWGIIPAPQHP 225          
BLAST of EY692139 vs. ExPASy Swiss-Prot
Match: COQ4_AEDAE (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Aedes aegypti GN=AAEL014646 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.826e-35
Identity = 69/137 (50.36%), Postives = 92/137 (67.15%), Query Frame = 3
Query:   39 LPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFPWAIRAGMQSTDLMCVYYEQHFHEDLEDLRKKWGI 449
            LP NTFG  Y SFM     +PD R  V+FMD  ELAYV  R RE HD  HT+FG+PTN++GE A+K +E   + LPMC+   I G+ R   KQR+ + Q Y PWA+RAG ++  LMCVY+E+ + +D+E+LRK+  I
Sbjct:  132 LPENTFGYQYVSFMEKYEITPDSRMEVKFMDDPELAYVMTRYRETHDLVHTVFGMPTNMLGEVAIKWVEAINIGLPMCYGGAIFGAFRLRPKQRQNYLQRYLPWALRAGQRARPLMCVYWEKRWEQDIEELRKELNI 268          
BLAST of EY692139 vs. ExPASy Swiss-Prot
Match: COQ4_DROYA (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Drosophila yakuba GN=GE22150 PE=3 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 5.011e-30
Identity = 59/137 (43.07%), Postives = 88/137 (64.23%), Query Frame = 3
Query:   39 LPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFPWAIRAGMQSTDLMCVYYEQHFHEDLEDLRKKWGI 449
            LPP+TFGAAY  F+     +PD R  VRF++  +LAY+  R RE HD  HT+  +PTN++GE A+K +E     LPMC+   + G+ R   KQR+ + +HY PWA+  G +S  LM VY+E+ + +++ +LR + GI
Sbjct:  126 LPPDTFGAAYVKFLKDNQVTPDSRMAVRFLEDPKLAYLMTRYRECHDLIHTVLDMPTNMLGEVAVKWVEALNTGLPMCYGGAVFGAVRLRPKQRRAYLKHYLPWALENGKRSKPLMPVYWEKRWEQNIHELRSELGI 262          
BLAST of EY692139 vs. ExPASy Swiss-Prot
Match: COQ4_DROAN (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Drosophila ananassae GN=GF24309 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.011e-30
Identity = 60/137 (43.80%), Postives = 88/137 (64.23%), Query Frame = 3
Query:   39 LPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFPWAIRAGMQSTDLMCVYYEQHFHEDLEDLRKKWGI 449
            LP ++FGAAY  F+     +PD R  VRF++  +LAY+  R RE HD  HT+ G+PTN++GE A+K +E     LPMC+   + G+ R   KQR+ + +HY PWA+  G +S  LM VY+E+ + + L+DLR + GI
Sbjct:  124 LPADSFGAAYVKFLKDNQVTPDSRMAVRFLEDPKLAYLMTRYRECHDLIHTVLGMPTNMLGEVAVKWVEALNTGLPMCYGGAVFGAVRLRPKQRRAYLKHYLPWALENGKRSKPLMPVYWEKRWEQKLQDLRAELGI 260          
BLAST of EY692139 vs. ExPASy Swiss-Prot
Match: COQ4_DROWI (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Drosophila willistoni GN=GK18052 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.545e-30
Identity = 64/142 (45.07%), Postives = 89/142 (62.68%), Query Frame = 3
Query:   39 LPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFPWAIRAGMQSTDLMCVYYEQHFHEDLEDLRKKWGIVPSPA 464
            LPP+TFGAAY  F+   N +PD R PVRF++  +LAY+  R RE HD  HT+  +PTN++GE A+K +E     LPMC+   + G+ R   KQR+ + + Y PWAI  G +   LM VY+EQ + ++L DL KK   +  PA
Sbjct:  117 LPPDTFGAAYVKFLKDNNVTPDSRMPVRFLEDPKLAYLMTRYRECHDLIHTVLNMPTNMLGEVAVKWVEALNTNLPMCYGGAVFGAVRLRPKQRREYLKRYLPWAIDNGKRMKPLMPVYWEQRWEQNL-DLAKKTSPIMLPA 257          
BLAST of EY692139 vs. ExPASy Swiss-Prot
Match: COQ4_DROER (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Drosophila erecta GN=GG15811 PE=3 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 8.548e-30
Identity = 58/137 (42.34%), Postives = 88/137 (64.23%), Query Frame = 3
Query:   39 LPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFPWAIRAGMQSTDLMCVYYEQHFHEDLEDLRKKWGI 449
            LPP+TFGAAY  F+     +PD R  VRF++  +LAY+  R RE HD  HT+  +PTN++GE ++K +E     LPMC+   + G+ R   KQR+ + +HY PWA+  G ++  LM VY+E+ + +++ DLR + GI
Sbjct:  126 LPPDTFGAAYVKFLKDNQVTPDSRMAVRFLEEPKLAYLMTRYRECHDLIHTVLDMPTNMLGEVSVKWVEALNTGLPMCYGGAVFGAVRLRPKQRRAYLKHYLPWALENGKRTKPLMPVYWEKRWEQNIHDLRSELGI 262          
BLAST of EY692139 vs. ExPASy Swiss-Prot
Match: COQ4_DROSI (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Drosophila simulans GN=GD12405 PE=3 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 1.116e-29
Identity = 58/137 (42.34%), Postives = 88/137 (64.23%), Query Frame = 3
Query:   39 LPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFPWAIRAGMQSTDLMCVYYEQHFHEDLEDLRKKWGI 449
            LPP+TFGAAY  F+     +PD R  VRF++  +LAY+  R RE HD  HT+  +PTN++GE A+K +E     LPMC+   + G+ R   KQR+ + +HY PWA+  G ++  LM VY+E+ + +++ +LR + GI
Sbjct:  126 LPPDTFGAAYVKFLKDNQVTPDSRMAVRFLEDPKLAYLMTRYRECHDLIHTVLDMPTNMLGEVAVKWVEALNTGLPMCYGGAVFGAVRLRPKQRRAYLKHYLPWALENGKRAKPLMPVYWEKRWEQNIHELRSELGI 262          
BLAST of EY692139 vs. ExPASy Swiss-Prot
Match: COQ4_DROSE (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Drosophila sechellia GN=GM24332 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.116e-29
Identity = 58/137 (42.34%), Postives = 88/137 (64.23%), Query Frame = 3
Query:   39 LPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFPWAIRAGMQSTDLMCVYYEQHFHEDLEDLRKKWGI 449
            LPP+TFGAAY  F+     +PD R  VRF++  +LAY+  R RE HD  HT+  +PTN++GE A+K +E     LPMC+   + G+ R   KQR+ + +HY PWA+  G ++  LM VY+E+ + +++ +LR + GI
Sbjct:  126 LPPDTFGAAYVKFLKDNQVTPDSRMAVRFLEDPKLAYLMTRYRECHDLIHTVLDMPTNMLGEVAVKWVEALNTGLPMCYGGAVFGAVRLRPKQRRAYLKHYLPWALENGKRAKPLMPVYWEKRWEQNIHELRSELGI 262          
BLAST of EY692139 vs. ExPASy Swiss-Prot
Match: COQ4_DROME (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Drosophila melanogaster GN=CG32174 PE=3 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 1.116e-29
Identity = 58/137 (42.34%), Postives = 88/137 (64.23%), Query Frame = 3
Query:   39 LPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFPWAIRAGMQSTDLMCVYYEQHFHEDLEDLRKKWGI 449
            LPP+TFGAAY  F+     +PD R  VRF++  +LAY+  R RE HD  HT+  +PTN++GE A+K +E     LPMC+   + G+ R   KQR+ + +HY PWA+  G ++  LM VY+E+ + +++ +LR + GI
Sbjct:  126 LPPDTFGAAYVKFLKDNQVTPDSRMAVRFLEDPKLAYLMTRYRECHDLIHTVLDMPTNMLGEVAVKWVEALNTGLPMCYGGAVFGAVRLRPKQRRAYLKHYLPWALENGKRTKPLMPVYWEKRWEQNIHELRSELGI 262          
BLAST of EY692139 vs. ExPASy Swiss-Prot
Match: COQ4_DROPS (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=GA16732 PE=3 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 7.236e-29
Identity = 58/137 (42.34%), Postives = 86/137 (62.77%), Query Frame = 3
Query:   39 LPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFPWAIRAGMQSTDLMCVYYEQHFHEDLEDLRKKWGI 449
            LP +TFGAAY  F+     +PD R  VRF++  +LAY+  R RE HD  HT+  +PTN++GE A+K +E     LPMC+   + G+ R   KQR+ + +HY PWA+  G Q   LM VY+E+ + +++ +LR + GI
Sbjct:  125 LPADTFGAAYVKFLKDNKVTPDSRMAVRFLEDPKLAYLMTRYRECHDLIHTVLDMPTNMLGEVAVKWVEALNTGLPMCYGGAVFGAVRLRPKQRRAYLKHYLPWALENGKQMKPLMPVYWEERWEQNVNELRAELGI 261          
The following BLAST results are available for this feature:
BLAST of EY692139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
COQ4_ARATH2.538e-7480.13Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]
COQ4_AEDAE8.826e-3550.36Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]
COQ4_DROYA5.011e-3043.07Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]
COQ4_DROAN5.011e-3043.80Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]
COQ4_DROWI6.545e-3045.07Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]
COQ4_DROER8.548e-3042.34Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]
COQ4_DROSI1.116e-2942.34Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]
COQ4_DROSE1.116e-2942.34Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]
COQ4_DROME1.116e-2942.34Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]
COQ4_DROPS7.236e-2942.34Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-097-C12-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692139 ID=EY692139; Name=EY692139; organism=Citrus sinensis; type=EST; length=853bp
CACGGGTTATATATGAAAAAGTAGGCCATGCGTGGGATCTACCACCAAAC
ACATTTGGTGCTGCCTATGCAAGTTTTATGGGATCCAGGAACTTCTCTCC
AGATGATCGCCCACCAGTGCGGTTCATGGACACAGATGAACTAGCATATG
TGGCCATGCGGGCTCGTGAGGTGCACGACTTCTGGCACACCCTTTTTGGT
CTTCCCACCAACTTGATTGGTGAGTCTGCTCTAAAAGTAATAGAGTTCCA
GCAAATGTACCTTCCAATGTGCTTCTTATCAGTTATAGGGGGCTCTGCCA
GATTTAGTGAGAAGCAAAGGAAACTGTTCTTCCAACACTACTTTCCATGG
GCCATCCGGGCTGGCATGCAGTCCACAGATCTCATGTGTGTGTATTACGA
GCAGCACTTTCACGAGGATTTGGAGGATCTTCGAAAGAAATGGGGAATAG
TCCCTTCTCCTGCTGCTCCTGTATGACCCTATTTAAAGTCAATGGATACC
CTGTGATGTCAGAGAATTTTTGTTGTCCGAACTGTTTTTGGTTGGTTGGG
AATACAGCTCAAACTACAGGAACAATTTGTAAAAAATCAAATGAGAAATA
ATACGCCCCCCAAAACAAATAAAAAAAGAAACAAAAGACAAAAGAAAAAA
AAAAAAAAGAGGGGGCGGGCCGCTCAAAAGGGAAACCAAACTAATGAAAG
TAGGGCGATGACAAAAACAAAACATAATCAAAGAATGCAAATTTAAAAAA
TCATTACAATGGGGAATGGATTTTATAAAATATGGAGGAGGGCGAAAAAA
CTGGAGCGTACCCGAAAACTAATATGAGCAATGAAGGACGCCAATCCTGA
TTA
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