EY692137

Overview
NameEY692137
Unique NameEY692137
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13600 contig Csv1_Contig13600:1..606. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY692137 vs. ExPASy Swiss-Prot
Match: SODC1_MESCR (Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum GN=SODCC.1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.278e-19
Identity = 55/133 (41.35%), Postives = 76/133 (57.14%), Query Frame = 2
Query:  116 ISFTQEGNGTTTVEGNISGVTPGDHALVIHTYGNVNNVWITTGAPFKPAGTK-----------GVIDNITVDVDGTATFKIY-GKVALSGPDSVIGRGLVLHSNP-------------SPNPGPGVAWGVIGL 439
            + FTQEG+G TTV GN+SG+ PG H   +H  G+  N  ++TG  F PAG +           G + NITV  DGTATF I   ++ L+GP+S++GR +V+H++P             + N G  VA GVIGL
Sbjct:   18 VQFTQEGSGPTTVTGNVSGLRPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDETRHAGDLGNITVGDDGTATFTIIDSQIPLTGPNSIVGRAVVVHADPDDLGRGGHELSKATGNAGGRVACGVIGL 150          
BLAST of EY692137 vs. ExPASy Swiss-Prot
Match: SODC1_BRAJU (Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea GN=SODCC1 PE=2 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 1.477e-18
Identity = 55/133 (41.35%), Postives = 72/133 (54.14%), Query Frame = 2
Query:  116 ISFTQEGNGTTTVEGNISGVTPGDHALVIHTYGNVNNVWITTGAPFKPAGT-----------KGVIDNITVDVDGTATFKIY-GKVALSGPDSVIGRGLVLHSNP-------------SPNPGPGVAWGVIGL 439
            I FTQEGNGTTTV G +SG+ PG H   +H  G+  N  ++TG  F P G             G + NITV  DGTATF I   ++ L GP+S++GR +V+H+ P             + N G  VA G+IGL
Sbjct:   18 IFFTQEGNGTTTVTGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPEGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDSQIPLDGPNSIVGRAVVVHAEPDDLGKGGHELSLTTGNAGGRVACGIIGL 150          
BLAST of EY692137 vs. ExPASy Swiss-Prot
Match: SODC_PAUKA (Superoxide dismutase [Cu-Zn] OS=Paulownia kawakamii GN=SODCC PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.929e-18
Identity = 54/133 (40.60%), Postives = 73/133 (54.89%), Query Frame = 2
Query:  116 ISFTQEGNGTTTVEGNISGVTPGDHALVIHTYGNVNNVWITTGAPFKPAGTK-----------GVIDNITVDVDGTATFKIYGK-VALSGPDSVIGRGLVLHSNP-------------SPNPGPGVAWGVIGL 439
            I FTQEG+G TTV GN+SG+ PG H   +H  G+  N  ++TG  F PAG +           G + N+TV  DGTA F I  K + L+GP S+IGR +V+H++P             + N G  VA G+ GL
Sbjct:   18 IYFTQEGDGPTTVTGNVSGLKPGPHGFHVHALGDTTNGCLSTGPHFNPAGKEHGAPDDEVRHAGDLGNVTVGEDGTAAFTIVDKQIPLTGPHSIIGRAVVVHADPDDLGKGGHELSKTTGNTGGRVACGINGL 150          
BLAST of EY692137 vs. ExPASy Swiss-Prot
Match: SODC_IPOBA (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN=SODCC PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 9.572e-18
Identity = 55/133 (41.35%), Postives = 74/133 (55.64%), Query Frame = 2
Query:  116 ISFTQEGNGTTTVEGNISGVTPGDHALVIHTYGNVNNVWITTGAPFKPAGTK-----------GVIDNITVDVDGTATFKIYGK-VALSGPDSVIGRGLVLHSNP-------------SPNPGPGVAWGVIGL 439
            I F+QEG+G TTV GN+SG+ PG H   +H  G+  N  ++TG  F PAG +           G + NITV  DGTA+F I  K + L+G +SVIGR +V+H +P             + N G  VA G+IGL
Sbjct:   18 IFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPGDDNRHAGDLGNITVGEDGTASFTITDKQIPLTGANSVIGRAVVVHGDPDDLGKGGHELSKSTGNAGGRVACGIIGL 150          
BLAST of EY692137 vs. ExPASy Swiss-Prot
Match: SODC_SPIOL (Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea GN=SODCC PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.250e-17
Identity = 52/133 (39.10%), Postives = 73/133 (54.89%), Query Frame = 2
Query:  116 ISFTQEGNGTTTVEGNISGVTPGDHALVIHTYGNVNNVWITTGAPFKPAGTK-----------GVIDNITVDVDGTATFKIY-GKVALSGPDSVIGRGLVLHSNP-------------SPNPGPGVAWGVIGL 439
            + F QEG+G TTV GN+SG+ PG H   +H  G+  N  ++TG  + P G +           G + NITV  DGTATF I   ++ LSGP+S++GR +V+H+ P             + N G  VA G+IGL
Sbjct:   18 VYFAQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPNGKEHGAPEDDVRHAGDLGNITVGDDGTATFTIIDSQIPLSGPNSIVGRAVVVHAEPDDLGRGGHELSKTTGNAGGRVACGIIGL 150          
BLAST of EY692137 vs. ExPASy Swiss-Prot
Match: SODC_ARATH (Superoxide dismutase [Cu-Zn] OS=Arabidopsis thaliana GN=SODCC PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.633e-17
Identity = 53/133 (39.85%), Postives = 73/133 (54.89%), Query Frame = 2
Query:  116 ISFTQEGNGTTTVEGNISGVTPGDHALVIHTYGNVNNVWITTGAPFKPAGT-----------KGVIDNITVDVDGTATFKIYG-KVALSGPDSVIGRGLVLHSNP-------------SPNPGPGVAWGVIGL 439
            I FTQEG+G TTV G +SG+ PG H   +H  G+  N  ++TG  F P G             G + NITV  DGTATF I   ++ L+GP+S++GR +V+H++P             + N G  VA G+IGL
Sbjct:   18 IFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHADPDDLGKGGHELSLATGNAGGRVACGIIGL 150          
BLAST of EY692137 vs. ExPASy Swiss-Prot
Match: SODC_NICPL (Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia GN=SODCC PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.132e-17
Identity = 52/133 (39.10%), Postives = 74/133 (55.64%), Query Frame = 2
Query:  116 ISFTQEGNGTTTVEGNISGVTPGDHALVIHTYGNVNNVWITTGAPFKPAGTK-----------GVIDNITVDVDGTATFKIYGK-VALSGPDSVIGRGLVLHSNP-------------SPNPGPGVAWGVIGL 439
            I FTQ+G+  TTV GN+SG+ PG H   +H  G+  N  ++TG  + PAG +           G + NITV  DGTA+F +  K + L+GP S+IGR +V+H++P             + N G  VA G+IGL
Sbjct:   18 IFFTQDGDAPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTLTDKQIPLAGPQSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150          
BLAST of EY692137 vs. ExPASy Swiss-Prot
Match: SODC_CAPAN (Superoxide dismutase [Cu-Zn] OS=Capsicum annuum GN=SODCC PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.132e-17
Identity = 52/133 (39.10%), Postives = 75/133 (56.39%), Query Frame = 2
Query:  116 ISFTQEGNGTTTVEGNISGVTPGDHALVIHTYGNVNNVWITTGAPFKPAGTK-----------GVIDNITVDVDGTATFKIYG-KVALSGPDSVIGRGLVLHSNP-------------SPNPGPGVAWGVIGL 439
            I F+Q+G+  TTV GN+SG+ PG H   +H  G+  N  ++TG  + PAG +           G + NITV  DGTA+F I   ++ L+GP S+IGRG+V+H++P             + N G  VA G+IGL
Sbjct:   18 ILFSQDGDAPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDENRHAGDLGNITVGEDGTASFTITDEQIPLTGPQSIIGRGVVVHADPDDLGKGGHELTKTTGNAGGRVACGIIGL 150          
BLAST of EY692137 vs. ExPASy Swiss-Prot
Match: SODC2_SOLLC (Superoxide dismutase [Cu-Zn] 2 OS=Solanum lycopersicum GN=SODCC.5 PE=3 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 2.132e-17
Identity = 53/133 (39.85%), Postives = 73/133 (54.89%), Query Frame = 2
Query:  116 ISFTQEGNGTTTVEGNISGVTPGDHALVIHTYGNVNNVWITTGAPFKPAGTK-----------GVIDNITVDVDGTATFKIYGK-VALSGPDSVIGRGLVLHSNP-------------SPNPGPGVAWGVIGL 439
            I FTQ+G   TTV GNISG+ PG H   +H  G+  N  ++TG  + PAG +           G + NITV  DGTA+F I  K + L+GP S+IGR +V+H++P             + N G  +A G+IGL
Sbjct:   18 ILFTQDGAAPTTVNGNISGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTITDKQIPLTGPQSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRIACGIIGL 150          
BLAST of EY692137 vs. ExPASy Swiss-Prot
Match: SODC_PINSY (Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris GN=SODCC PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.637e-17
Identity = 50/133 (37.59%), Postives = 72/133 (54.14%), Query Frame = 2
Query:  116 ISFTQEGNGTTTVEGNISGVTPGDHALVIHTYGNVNNVWITTGAPFKPAGTK-----------GVIDNITVDVDGTATFKIY-GKVALSGPDSVIGRGLVLHSNP-------------SPNPGPGVAWGVIGL 439
            + FTQEG+G TTV G ISG++PG H   +H  G+  N  ++TG  F P G +           G + N+TV  DGT  F I   ++ LSGP S++GR +V+H++P             + N G  +A GV+GL
Sbjct:   20 VQFTQEGDGPTTVTGKISGLSPGLHGFHVHALGDTTNGCMSTGPHFNPLGKEHGAPTDDNRHAGDLGNVTVGTDGTVEFSITDSQIPLSGPHSIVGRAVVVHADPDDLGKGGHELSKSTGNAGGRLACGVVGL 152          
The following BLAST results are available for this feature:
BLAST of EY692137 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
SODC1_MESCR2.278e-1941.35Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum... [more]
SODC1_BRAJU1.477e-1841.35Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea ... [more]
SODC_PAUKA1.929e-1840.60Superoxide dismutase [Cu-Zn] OS=Paulownia kawakami... [more]
SODC_IPOBA9.572e-1841.35Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN... [more]
SODC_SPIOL1.250e-1739.10Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea ... [more]
SODC_ARATH1.633e-1739.85Superoxide dismutase [Cu-Zn] OS=Arabidopsis thalia... [more]
SODC_NICPL2.132e-1739.10Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbagi... [more]
SODC_CAPAN2.132e-1739.10Superoxide dismutase [Cu-Zn] OS=Capsicum annuum GN... [more]
SODC2_SOLLC2.132e-1739.85Superoxide dismutase [Cu-Zn] 2 OS=Solanum lycopers... [more]
SODC_PINSY3.637e-1737.59Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-097-C07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692137 ID=EY692137; Name=EY692137; organism=Citrus sinensis; type=EST; length=619bp
CCACGCGTCCGAAAAGCCCTCTTCATTTTCCTTCTCTAAGGGTTTTTCGA
GATCACGTAGCACAATGGTGAATGCAACTGTAGTTCTTACTGGAGTTGTG
GGTCGTGTTGGAACTATTTCCTTTACCCAGGAAGGAAATGGTACAACAAC
CGTGGAAGGAAACATCTCTGGTGTCACTCCTGGTGATCATGCACTGGTTA
TTCACACTTACGGAAACGTAAATAATGTTTGGATAACAACTGGAGCCCCT
TTTAAACCTGCTGGAACTAAAGGTGTTATAGACAATATCACTGTTGATGT
TGACGGTACTGCTACTTTTAAAATTTACGGGAAGGTTGCTCTTTCTGGAC
CAGATTCTGTTATTGGAAGGGGTCTTGTACTCCACTCAAATCCCAGTCCA
AATCCCGGTCCCGGAGTAGCTTGGGGTGTCATCGGTCTCGATGCATGAAA
TGGCTTCTCTCCAAACCATAATAAATACATTTGACATGATGTTACATGTG
TTATAAAATATTTAATAAAATAAATAATATGTTGCACGAAGCATGGCTAT
AGTAAAACTAAAATAAAAAGCCATAACGAACCTGTAATATCTTGTACCAA
AAAAAAAAAAAAAAAAGGC
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