EY692035

Overview
NameEY692035
Unique NameEY692035
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length962
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY692035_ssr236 microsatellite EY692035_ssr236:236..247. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY692035 vs. ExPASy Swiss-Prot
Match: RSSA_SOYBN (40S ribosomal protein SA OS=Glycine max PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.436e-33
Identity = 80/144 (55.56%), Postives = 89/144 (61.81%), Query Frame = 2
Query:   17 NFPGRTARPTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXXXIDYATAEYSMNLTSGE-QWPSQIADGGWAGGEVQKPIPVVLYFPEAAPT-AIVPLGGDGWDAVP 442
            N P      TDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPG KWDVMVDLFFYR               +DYA  +++    + + QWP  I D  W+   V +PIP V      AP  A    GGD  +AVP
Sbjct:  148 NIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEEEAPAVDYAITDFNAGAIAADGQWPGTI-DQSWSDA-VPQPIPAVPGVNWGAPAEAPAAAGGDWGEAVP 289          
BLAST of EY692035 vs. ExPASy Swiss-Prot
Match: RSSA_CICAR (40S ribosomal protein SA OS=Cicer arietinum GN=RAP40 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.862e-33
Identity = 81/143 (56.64%), Postives = 91/143 (63.64%), Query Frame = 2
Query:   17 NFPGRTARPTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXXXIDYATAEYSMN-LTSGEQWPSQIADGGWAGGEVQKPIPVVLYFPEAAPTAIVPLGGDGWDAVP 442
            N P      TDSPM YVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPG KWDVMVDLFFYR                DYA A+++++ + S  QWP+ I D  W    V +PIP V     AAP A+    GD  +AVP
Sbjct:  144 NIPTIAFCDTDSPMNYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQPEEDEVAAPDYAIADFNVSAIPSDGQWPAAI-DQPW-NDAVPQPIPAVPAVNWAAPEAV---AGDWGEAVP 281          
BLAST of EY692035 vs. ExPASy Swiss-Prot
Match: RSSA_DAUCA (40S ribosomal protein SA OS=Daucus carota GN=179B PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.705e-32
Identity = 76/145 (52.41%), Postives = 82/145 (56.55%), Query Frame = 2
Query:   17 NFPGRTARPTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXXXIDYATAEYSMNLTSGEQWPSQIADGGWAGGEVQKPIPVVLYFPEAAPTAIVPLGGDGWDAVPAHP 451
            N P      TDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG I  GHKW+VMVDLFFYR                DY     +  +   +QW + I D  W G  VQ   P     P    T   P+ GDGWDA  A P
Sbjct:  141 NIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGVISQGHKWEVMVDLFFYREPEETKDQEEEDLPVGDYVADYAAAPIGGADQW-NAIPDAQWGGDVVQ---PANSAVPAGTWTDAGPIAGDGWDAAAAPP 281          
BLAST of EY692035 vs. ExPASy Swiss-Prot
Match: RSSA_VITVI (40S ribosomal protein SA OS=Vitis vinifera GN=GSVIVT00034021001 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.962e-32
Identity = 82/156 (52.56%), Postives = 91/156 (58.33%), Query Frame = 2
Query:   17 NFPGRTARPTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXXXI-DYATAEY---SMNLTSGEQWPSQIADGGWAGGEVQ--KPIPVV--LYFPEAAP-TAIVPLGGDGWDAVPAHPRA 457
            N P      TDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMR TI PGHKWDVMVDLFFYR                 DY   +Y   ++    G  W + I D    G +V    PIP V    + +AAP  + VP+  DGWDA  A P A
Sbjct:  141 NIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRRTIAPGHKWDVMVDLFFYREPEEPKEQEGDEVVAAPDYGITDYQATALGGLGGGDWGAPITDAPQWGADVPAVAPIPAVPGSNWGDAAPMPSAVPIATDGWDAAAAPPVA 296          
BLAST of EY692035 vs. ExPASy Swiss-Prot
Match: RSSA2_ARATH (40S ribosomal protein Sa-2 OS=Arabidopsis thaliana GN=RPSaB PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 3.328e-28
Identity = 75/146 (51.37%), Postives = 87/146 (59.59%), Query Frame = 2
Query:   17 NFPGRTARPTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXXXIDYATAEYSMNLTSGEQW-PSQIADGGWAGGEVQKPIPVVLYFPEAAPTAIVPLGGDGWDA--VPA 445
            N P      TDSPM +VDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI    KWDVMVDLFFYR                + A  +    +  G+QW  +QI+D  W+ GEV++PI        AAP   V +   GW+A  VPA
Sbjct:  146 NIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVMVDLFFYREPEEAKQEGD------EEAEVQADYGMVGGDQWTTAQISDAAWS-GEVEQPI-------SAAPAVGVTVAA-GWEAASVPA 276          
BLAST of EY692035 vs. ExPASy Swiss-Prot
Match: RSSA1_ARATH (40S ribosomal protein Sa-1 OS=Arabidopsis thaliana GN=RPSaA PE=1 SV=3)

HSP 1 Score: 125.561 bits (314), Expect = 4.347e-28
Identity = 74/136 (54.41%), Postives = 81/136 (59.56%), Query Frame = 2
Query:   44 TDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR-XXXXXXXXXXXXXXXIDYA---TAEYSMNLTSGEQW-PSQIADGGWAGGEVQKPIPVVLYFPEAAPTAIVPLGGDGWDA 436
            TDSPMR+VDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI  G KWDVMVDLFFYR                 +Y      EY M    G+QW  +QI D  W  GE Q PI         + +A  P  G GW+A
Sbjct:  154 TDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIAAGQKWDVMVDLFFYREPEETKPEDEDEAGPQAEYGALPAPEYGM--VGGDQWTTAQIPDAAWP-GEGQAPISAAPAAASWSDSAAAPADG-GWEA 285          
BLAST of EY692035 vs. ExPASy Swiss-Prot
Match: RSSA_BRANA (40S ribosomal protein SA OS=Brassica napus GN=LRP PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.652e-27
Identity = 71/135 (52.59%), Postives = 77/135 (57.04%), Query Frame = 2
Query:   44 TDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXXXIDYATAEYSM---NLTSGEQW-PSQIADGGWAGGEVQKPIPVVLYFPEAAPTAIVPLGGDGWDA 436
            TDSPMR+VDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP  KWDVMVDLFFYR                    AE+ +       G+QW  + I D  W  GE Q PI           +A       GWDA
Sbjct:  151 TDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPAQKWDVMVDLFFYREPEETKPEDEDEVA----PQAEFGLPAPEYGGGDQWTTAAIPDAAWP-GEAQAPISAAPAAGSWNDSAAPAAAEGGWDA 280          
BLAST of EY692035 vs. ExPASy Swiss-Prot
Match: RSSA_OSTTA (40S ribosomal protein SA OS=Ostreococcus tauri GN=Ot03g03270 PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 2.162e-19
Identity = 46/65 (70.77%), Postives = 51/65 (78.46%), Query Frame = 2
Query:   17 NFPGRTARPTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 211
            N P      TDSP++ VDI IPANNK K SIGCL++LLARMVLQMRGTI P + WDVMVDLFFYR
Sbjct:  138 NIPTIAFCDTDSPLKNVDIAIPANNKAKQSIGCLYYLLARMVLQMRGTISPANPWDVMVDLFFYR 202          
BLAST of EY692035 vs. ExPASy Swiss-Prot
Match: RSSA_OSTLU (40S ribosomal protein SA OS=Ostreococcus lucimarinus (strain CCE9901) GN=OSTLU_12355 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.689e-19
Identity = 44/65 (67.69%), Postives = 51/65 (78.46%), Query Frame = 2
Query:   17 NFPGRTARPTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 211
            N P      TDSP++ VD+ IPANNK KHSIGCL++LLARMVLQMRGT+   + WDVMVDLFFYR
Sbjct:  138 NLPTIAFCDTDSPLKNVDVAIPANNKAKHSIGCLYYLLARMVLQMRGTVSAANPWDVMVDLFFYR 202          
BLAST of EY692035 vs. ExPASy Swiss-Prot
Match: RSSA_DANRE (40S ribosomal protein SA OS=Danio rerio GN=rpsa PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.402e-18
Identity = 65/175 (37.14%), Postives = 87/175 (49.71%), Query Frame = 2
Query:   17 NFPGRTARPTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXXXIDYATAEYSMNLTSGE-QWPSQIAD------GGWAGGEVQKPIPVVLYFPEA--APTAIVP--LGGDGWDAVPAHPRARVTAHPMVSRCGSWGAA 508
            N P      TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM DL+FYR                + A AE ++     + +W + + D        W+ G VQ P   +  FP    AP    P  +  + W A PA      +A P  ++ G WG A
Sbjct:  141 NIPTIALCNTDSPLRYVDIAIPCNNKGPHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEIEKE--------EQAAAEKAVGKEEFQGEWTAPVPDFNQPEVADWSEG-VQVPSVPIQQFPAGIEAPGKPAPAEVYAEDWSAQPA--TEDWSAAP-TAQAGDWGGA 303          
The following BLAST results are available for this feature:
BLAST of EY692035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
RSSA_SOYBN3.436e-3355.5640S ribosomal protein SA OS=Glycine max PE=2 SV=1[more]
RSSA_CICAR5.862e-3356.6440S ribosomal protein SA OS=Cicer arietinum GN=RAP... [more]
RSSA_DAUCA1.705e-3252.4140S ribosomal protein SA OS=Daucus carota GN=179B ... [more]
RSSA_VITVI4.962e-3252.5640S ribosomal protein SA OS=Vitis vinifera GN=GSVI... [more]
RSSA2_ARATH3.328e-2851.3740S ribosomal protein Sa-2 OS=Arabidopsis thaliana... [more]
RSSA1_ARATH4.347e-2854.4140S ribosomal protein Sa-1 OS=Arabidopsis thaliana... [more]
RSSA_BRANA1.652e-2752.5940S ribosomal protein SA OS=Brassica napus GN=LRP ... [more]
RSSA_OSTTA2.162e-1970.7740S ribosomal protein SA OS=Ostreococcus tauri GN=... [more]
RSSA_OSTLU3.689e-1967.6940S ribosomal protein SA OS=Ostreococcus lucimarin... [more]
RSSA_DANRE1.402e-1837.1440S ribosomal protein SA OS=Danio rerio GN=rpsa PE... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-086-H01-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692035 ID=EY692035; Name=EY692035; organism=Citrus sinensis; type=EST; length=962bp
TGGCAGTCAGGGTCGGAATTTCCCGGGTCGGACCGCGCGTCCGACTGACT
CACCTATGCGTTATGTTGATATTGGCATTCCTGCCAATAACAAGGGCAAA
CACAGCATTGGGTGTCTCTTCTGGCTTTTGGCTAGAATGGTTCTCCAGAT
GCGCGGCACTATTCGTCCTGGCCACAAGTGGGATGTGATGGTCGATCTGT
TCTTCTACAGGGAGCCAGAAGAAACCAAGCAGGCTGAAGAAGAAGAAACT
GCTGCTATTGATTATGCTACAGCAGAGTACAGCATGAATCTTACCAGTGG
TGAGCAATGGCCTTCCCAAATTGCTGATGGTGGGTGGGCGGGTGGTGAAG
TTCAGAAGCCCATTCCTGTTGTTCTCTATTTCCCAGAAGCAGCACCAACA
GCTATAGTTCCTTTGGGTGGGGATGGATGGGATGCAGTGCCGGCACACCC
ACGGGCAAGAGTTACTGCACACCCCATGGTCAGCAGGTGCGGCTCGTGGG
GTGCCGCTGGACCCATGCGTAGTGGCGAGTGAATAGATTAGAGTGAGAGG
GTTATGCCGCTTCCTAAGCATCCACTTCTGACACATAAATGTTTTGATTT
ATAACTTCTTTTTGTCACCGCTGAGGAAATGGGCCGTTACCCAGTAGGGT
AAGATATGACATAAACGAAGACGCAAGAAAACACGACTATATATGTACAA
ACCTGTCCAAACTAAACAACAACTACGGTAAACCCGTATACCGTACCCTA
AAACTTCTATAGTCCACTATTTATAAAATAAAATACCATGAAGTTTACGA
AAGAGGGAATATGGAATCTACCTGTACCGACGCACCACATGGGCATTGGC
AAAACCACTATGTCAGTCACAAAACAAAACGTACGACAATACCTACTGCG
CGCGCGAAGCCAAACCTAGAAAAAACACTTCAAAGAATACACATCACCCC
CAATGAAATAAA
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