EY692004

Overview
NameEY692004
Unique NameEY692004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1049
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY692004_ssr63 microsatellite EY692004_ssr63:63..83. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY692004 vs. ExPASy Swiss-Prot
Match: CIRBP_XENTR (Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.905e-14
Identity = 38/71 (53.52%), Postives = 51/71 (71.83%), Query Frame = 2
Query:  293 GLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 505
            GL+F T+ + L   FS+YGQV E  +V DR S +S+GFGFVTF + E+A+ A+  MNGK++DGR I VD A
Sbjct:   12 GLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of EY692004 vs. ExPASy Swiss-Prot
Match: CIRBP_RANCA (Cold-inducible RNA-binding protein OS=Rana catesbeiana GN=cirbp PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.624e-13
Identity = 38/71 (53.52%), Postives = 51/71 (71.83%), Query Frame = 2
Query:  293 GLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 505
            GLSF T  + L   FS+YGQ+ E  +V DR + +S+GFGFVTF + E+A+ A++ MNGKT+DGR I VD A
Sbjct:   12 GLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTVDGRQIRVDQA 82          
BLAST of EY692004 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.427e-13
Identity = 35/74 (47.30%), Postives = 54/74 (72.97%), Query Frame = 2
Query:  293 GLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAKAK 514
            GL + T ++ L +AFS+YG V+++ I+ DR + +S+GFGFVTFAS E   +A+  MNG+ LDGR I V+ A+++
Sbjct:   12 GLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQSR 85          
BLAST of EY692004 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.427e-13
Identity = 33/74 (44.59%), Postives = 54/74 (72.97%), Query Frame = 2
Query:  293 GLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAKAK 514
            GL++ TSN+ L +AF+ YG+++++ ++ DR + +S+GFGFVTF+S      A+  MNGK LDGR I V+ A+++
Sbjct:   14 GLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQSR 87          
BLAST of EY692004 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.427e-13
Identity = 35/74 (47.30%), Postives = 53/74 (71.62%), Query Frame = 2
Query:  293 GLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAKAK 514
            GL++ T+++ L   FSQ+G V+++ I+ DR S +S+GFGFVTF   +    A+ EMNGK LDGRVI V+ A+++
Sbjct:   12 GLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85          
BLAST of EY692004 vs. ExPASy Swiss-Prot
Match: CIRBP_RAT (Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.476e-13
Identity = 36/71 (50.70%), Postives = 51/71 (71.83%), Query Frame = 2
Query:  293 GLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 505
            GLSF T+ + L   FS+YGQ+ E  +V DR + +S+GFGFVTF + ++A+ A+  MNGK++DGR I VD A
Sbjct:   12 GLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of EY692004 vs. ExPASy Swiss-Prot
Match: CIRBP_PONAB (Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.476e-13
Identity = 36/71 (50.70%), Postives = 51/71 (71.83%), Query Frame = 2
Query:  293 GLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 505
            GLSF T+ + L   FS+YGQ+ E  +V DR + +S+GFGFVTF + ++A+ A+  MNGK++DGR I VD A
Sbjct:   12 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of EY692004 vs. ExPASy Swiss-Prot
Match: CIRBP_MOUSE (Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.476e-13
Identity = 36/71 (50.70%), Postives = 51/71 (71.83%), Query Frame = 2
Query:  293 GLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 505
            GLSF T+ + L   FS+YGQ+ E  +V DR + +S+GFGFVTF + ++A+ A+  MNGK++DGR I VD A
Sbjct:   12 GLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of EY692004 vs. ExPASy Swiss-Prot
Match: CIRBP_HUMAN (Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.476e-13
Identity = 36/71 (50.70%), Postives = 51/71 (71.83%), Query Frame = 2
Query:  293 GLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 505
            GLSF T+ + L   FS+YGQ+ E  +V DR + +S+GFGFVTF + ++A+ A+  MNGK++DGR I VD A
Sbjct:   12 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of EY692004 vs. ExPASy Swiss-Prot
Match: CIRBP_CRIGR (Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.476e-13
Identity = 36/71 (50.70%), Postives = 51/71 (71.83%), Query Frame = 2
Query:  293 GLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 505
            GLSF T+ + L   FS+YGQ+ E  +V DR + +S+GFGFVTF + ++A+ A+  MNGK++DGR I VD A
Sbjct:   12 GLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
The following BLAST results are available for this feature:
BLAST of EY692004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
CIRBP_XENTR6.905e-1453.52Cold-inducible RNA-binding protein OS=Xenopus trop... [more]
CIRBP_RANCA2.624e-1353.52Cold-inducible RNA-binding protein OS=Rana catesbe... [more]
GRP_HORVU3.427e-1347.30Glycine-rich RNA-binding protein blt801 OS=Hordeum... [more]
GRPA_MAIZE3.427e-1344.59Glycine-rich RNA-binding, abscisic acid-inducible ... [more]
GRP8_ARATH3.427e-1347.30Glycine-rich RNA-binding protein 8 OS=Arabidopsis ... [more]
CIRBP_RAT4.476e-1350.70Cold-inducible RNA-binding protein OS=Rattus norve... [more]
CIRBP_PONAB4.476e-1350.70Cold-inducible RNA-binding protein OS=Pongo abelii... [more]
CIRBP_MOUSE4.476e-1350.70Cold-inducible RNA-binding protein OS=Mus musculus... [more]
CIRBP_HUMAN4.476e-1350.70Cold-inducible RNA-binding protein OS=Homo sapiens... [more]
CIRBP_CRIGR4.476e-1350.70Cold-inducible RNA-binding protein OS=Cricetulus g... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-086-D07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692004 ID=EY692004; Name=EY692004; organism=Citrus sinensis; type=EST; length=1049bp
TACCGGGGTCCGGAAATTCCGGGGGTCGACCACGCGTCCGAAAAAAATAA
AAAATAAATCAGGAAGAAGAAGAAGAAGAAGAATAGACGACACGATCATT
TTGGGCGAAATGTTTTTTCTTTCCTATTTAGTTATAAATTACTTACTTAG
CTCGTTACTCACAACAAGATAAATCGACGAAGGCAGTCTCTCCCCTTCCC
AGAAAAATATCAGAGTCTGGCATCGCATGGCGGCGATTAGAAAGATTGTT
GGGAGAAACAGAAACCTGACGTCATTTAACAGTAATTCTAACGGTCTGTC
ATTCTACACCTCAAACAAGGGACTATCGGACGCATTTTCTCAATATGGTC
AAGTTGTTGAAGCTAATATTGTGATGGACAGAGTCTCAGATAAATCAAAG
GGCTTTGGATTTGTGACCTTTGCATCCCATGAGGAAGCTGAGAAAGCGCT
GTCTGAGATGAATGGAAAAACACTGGACGGCCGTGTAATAGTTGTAGATT
ACGCCAAAGCCAAACACCAGCTTTCGTAAGTGGAATGCCTATAACAAGGG
GACCCTCCTGAATCCATAGCTGACAGAGTGAAAGTTAATTTCTTTGGATG
AAAAACCAAAACACAGAAATTCGTAGACTGGAGAAAAATTATACATCAAA
GTCATGGAGATATGGGAGACCATTAACCAAGAACTGACTGGAGGGTGCGG
AATATGGCTTTCCTTAACGGGTTTGGATTAGGGGTTAGGTGGCAAAAGTT
GGTGACAAAAATATATTTTAAAATTTAAAGGATGGAAGAAAGTACTAAGC
CATTGGTTTCCGGAGGGCCTTTGGGTATTTGTCAGAATGTTTTTTACTTC
CGGAAGGGGGACCAAGTTTGGATAAAAAGGAAAAACAAGGGGTAATCCCT
CATTCGTTATTGTAAAGAGTAAAAAAAAAAGGGGGAGGCGGACTACTAAG
AAGGAGAAAAAAGCGTAATAGAAAAGTGATGAGGAGAGGCAGAGGAACAA
AAAAGAAAATGATGTAAAGAGGAGGATGAAAAAAAGAAGAATGCTAAAT
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