EY691975

Overview
NameEY691975
Unique NameEY691975
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY691975_ssr541 microsatellite EY691975_ssr541:541..552. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY691975 vs. ExPASy Swiss-Prot
Match: UFM1_ORYSJ (Probable ubiquitin-fold modifier 1 OS=Oryza sativa subsp. japonica GN=Os01g0962400 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.953e-39
Identity = 81/85 (95.29%), Postives = 82/85 (96.47%), Query Frame = 1
Query:    7 GSEKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVGA 261
            G  KVSFK+ LTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVGA
Sbjct:   13 GGGKVSFKIILTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVGA 97          
BLAST of EY691975 vs. ExPASy Swiss-Prot
Match: UFM1_ARATH (Probable ubiquitin-fold modifier 1 OS=Arabidopsis thaliana GN=At1g77710 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.331e-39
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 1
Query:   16 KVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVGA 261
            KVSFKVTLTSDPKLPFKVFSVPE APFTAVLKFAAEEFKVPPQTSAIITNDG+GINPQQSAGNVFLKHGSELRLIPRDRVGA
Sbjct:    6 KVSFKVTLTSDPKLPFKVFSVPEGAPFTAVLKFAAEEFKVPPQTSAIITNDGIGINPQQSAGNVFLKHGSELRLIPRDRVGA 87          
BLAST of EY691975 vs. ExPASy Swiss-Prot
Match: UFM1_CHLIN (Probable ubiquitin-fold modifier 1 OS=Chlamydomonas incerta GN=PR46a PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.072e-37
Identity = 78/88 (88.64%), Postives = 82/88 (93.18%), Query Frame = 1
Query:    7 GSEKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVGASRM 270
            G  KV+FKVTLTSDPKLPF+VFSVPE APFTAVLKFAAEEFKVP QTSAIITNDGVGINPQQ+AGNVFLKHGSELRLIPRDRVG S +
Sbjct:   10 GVTKVTFKVTLTSDPKLPFRVFSVPEEAPFTAVLKFAAEEFKVPAQTSAIITNDGVGINPQQTAGNVFLKHGSELRLIPRDRVGGSSL 97          
BLAST of EY691975 vs. ExPASy Swiss-Prot
Match: UFM1_CHLRE (Probable ubiquitin-fold modifier 1 OS=Chlamydomonas reinhardtii GN=PR46a PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.021e-36
Identity = 76/81 (93.83%), Postives = 78/81 (96.30%), Query Frame = 1
Query:   16 KVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVG 258
            KV+FKVTLTSDPKLPF+VFSVPE APFTAVLKFAAEEFKVP QTSAIITNDGVGINPQQ AGNVFLKHGSELRLIPRDRVG
Sbjct:   10 KVTFKVTLTSDPKLPFRVFSVPEEAPFTAVLKFAAEEFKVPAQTSAIITNDGVGINPQQIAGNVFLKHGSELRLIPRDRVG 90          
BLAST of EY691975 vs. ExPASy Swiss-Prot
Match: UFM1_CAEBR (Probable ubiquitin-fold modifier 1 OS=Caenorhabditis briggsae GN=CBG12253 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.109e-34
Identity = 71/81 (87.65%), Postives = 77/81 (95.06%), Query Frame = 1
Query:   16 KVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVG 258
            KV+FK+TLTSDPKLPFKV SVPEAAPFT+VL++AAEEFKVP  TSAIITNDGVGINP QSAGN+FLKHGSELRLIPRDRVG
Sbjct:   11 KVTFKITLTSDPKLPFKVLSVPEAAPFTSVLRYAAEEFKVPAATSAIITNDGVGINPAQSAGNIFLKHGSELRLIPRDRVG 91          
BLAST of EY691975 vs. ExPASy Swiss-Prot
Match: UFM1_RAT (Ubiquitin-fold modifier 1 OS=Rattus norvegicus GN=Ufm1 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.471e-34
Identity = 70/82 (85.37%), Postives = 77/82 (93.90%), Query Frame = 1
Query:   16 KVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVGA 261
            KVSFK+TLTSDP+LP+KV SVPE+ PFTAVLKFAAEEFKVP  TSAIITNDG+GINP Q+AGNVFLKHGSELRLIPRDRVG+
Sbjct:    3 KVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIPRDRVGS 84          
BLAST of EY691975 vs. ExPASy Swiss-Prot
Match: UFM1_CAEEL (Probable ubiquitin-fold modifier 1 OS=Caenorhabditis elegans GN=tag-277 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.227e-34
Identity = 70/81 (86.42%), Postives = 75/81 (92.59%), Query Frame = 1
Query:   16 KVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVG 258
            KV+FK+TLTSDPKLPFKV SVPE+ PFTAVLKFAAEEFKVP  TSAIITNDGVG+NP Q AGN+FLKHGSELRLIPRDRVG
Sbjct:   13 KVTFKITLTSDPKLPFKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGVGVNPAQPAGNIFLKHGSELRLIPRDRVG 93          
BLAST of EY691975 vs. ExPASy Swiss-Prot
Match: UFM1_PONAB (Ubiquitin-fold modifier 1 OS=Pongo abelii GN=UFM1 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.214e-34
Identity = 69/82 (84.15%), Postives = 77/82 (93.90%), Query Frame = 1
Query:   16 KVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVGA 261
            KVSFK+TLTSDP+LP+KV SVPE+ PFTAVLKFAAEEFKVP  TSAIITNDG+GINP Q+AGNVFLKHGSELR+IPRDRVG+
Sbjct:    3 KVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVGS 84          
BLAST of EY691975 vs. ExPASy Swiss-Prot
Match: UFM1_MOUSE (Ubiquitin-fold modifier 1 OS=Mus musculus GN=Ufm1 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.214e-34
Identity = 69/82 (84.15%), Postives = 77/82 (93.90%), Query Frame = 1
Query:   16 KVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVGA 261
            KVSFK+TLTSDP+LP+KV SVPE+ PFTAVLKFAAEEFKVP  TSAIITNDG+GINP Q+AGNVFLKHGSELR+IPRDRVG+
Sbjct:    3 KVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVGS 84          
BLAST of EY691975 vs. ExPASy Swiss-Prot
Match: UFM1_MACFA (Ubiquitin-fold modifier 1 OS=Macaca fascicularis GN=UFM1 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.214e-34
Identity = 69/82 (84.15%), Postives = 77/82 (93.90%), Query Frame = 1
Query:   16 KVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVGA 261
            KVSFK+TLTSDP+LP+KV SVPE+ PFTAVLKFAAEEFKVP  TSAIITNDG+GINP Q+AGNVFLKHGSELR+IPRDRVG+
Sbjct:    3 KVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVGS 84          
The following BLAST results are available for this feature:
BLAST of EY691975 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
UFM1_ORYSJ1.953e-3995.29Probable ubiquitin-fold modifier 1 OS=Oryza sativa... [more]
UFM1_ARATH3.331e-3997.56Probable ubiquitin-fold modifier 1 OS=Arabidopsis ... [more]
UFM1_CHLIN1.072e-3788.64Probable ubiquitin-fold modifier 1 OS=Chlamydomona... [more]
UFM1_CHLRE2.021e-3693.83Probable ubiquitin-fold modifier 1 OS=Chlamydomona... [more]
UFM1_CAEBR1.109e-3487.65Probable ubiquitin-fold modifier 1 OS=Caenorhabdit... [more]
UFM1_RAT2.471e-3485.37Ubiquitin-fold modifier 1 OS=Rattus norvegicus GN=... [more]
UFM1_CAEEL3.227e-3486.42Probable ubiquitin-fold modifier 1 OS=Caenorhabdit... [more]
UFM1_PONAB4.214e-3484.15Ubiquitin-fold modifier 1 OS=Pongo abelii GN=UFM1 ... [more]
UFM1_MOUSE4.214e-3484.15Ubiquitin-fold modifier 1 OS=Mus musculus GN=Ufm1 ... [more]
UFM1_MACFA4.214e-3484.15Ubiquitin-fold modifier 1 OS=Macaca fascicularis G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-086-A02-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY691975 ID=EY691975; Name=EY691975; organism=Citrus sinensis; type=EST; length=827bp
TTTCTTGGGTCGGAAAAGGTCTCCTTCAAGGTTACGCTCACCTCCGATCC
TAAGCTTCCCTTCAAAGTGTTTAGCGTTCCTGAAGCGGCTCCGTTTACCG
CCGTTTTGAAATTCGCAGCCGAGGAATTCAAAGTCCCTCCTCAAACTAGC
GCTATCATCACCAACGATGGTGTGGGAATCAATCCTCAGCAAAGTGCAGG
CAATGTCTTCCTCAAACATGGTTCCGAGCTTCGGTTGATTCCCCGTGACA
GGGTTGGTGCTTCAAGGATGGTGGGAGCTGCATCATTGTTGGAATGAAGC
GACCGGTTCACCTGGATTAATTTGAATCCATTGCTTTAATTTTCAACATG
ATGGGGGCATATTTAATTTATTATATCTTATGCATCATACTTCTTGGGTA
AAGATTTTCCTTTGTGTTGTGAAAGGCAAAGTATTTGTAGTTTTGAAAGA
ATGGGATGAAACTATGAGGCATGCAATTTATGAAAAGGCCACCAAGATCA
TTATGATAATAAGTAGGGAATTGACTACGATGCCTGAGCCAAGAAAGAAA
GAGAATGCAAAAATAGAATAAAGGGGCGGCCGCCCCATATGATCAACACT
AAGTACGCGGTTCGATCTATCTAATTCAATAATATGGCCCCTTAATAAAT
ACAGGGCACGCATAATAAGACAAAAGAGGGTGAATCGTGGTGATATCACG
GATGTGCTCTATAGACAAACCCCTTCCGCCGGCGCACAGAGTAGAGGGGC
AGACTATACTCGCTCGAACGTGGAGAACTAAAAAAAAAGAAGAATACGAG
ATAAAGTATTGACACTAGAATAATAAA
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