EY691970

Overview
NameEY691970
Unique NameEY691970
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY691970 vs. ExPASy Swiss-Prot
Match: H2AV3_ARATH (Probable histone H2A variant 3 OS=Arabidopsis thaliana GN=At1g52740 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.200e-30
Identity = 70/102 (68.63%), Postives = 74/102 (72.55%), Query Frame = 1
Query:   88 AKGLITGKTTIXXXXXXXXXXPVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 393
            AKGLI GK +           P++RSSRAGLQFPVGRVHRLLK               YTAAILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEEL
Sbjct:    6 AKGLIMGKPS-GSDKDKDKKKPITRSSRAGLQFPVGRVHRLLKTRSTAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEEL 106          

HSP 2 Score: 29.261 bits (64), Expect = 2.200e-30
Identity = 16/22 (72.73%), Postives = 18/22 (81.82%), Query Frame = 3
Query:  405 LKETIAGGGVIPSYPTKSLINK 470
            +K TIAGGGVIP +  KSLINK
Sbjct:  110 IKGTIAGGGVIP-HIHKSLINK 130          
BLAST of EY691970 vs. ExPASy Swiss-Prot
Match: H2AV3_ORYSJ (Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica GN=Os03g0743400 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 4.851e-30
Identity = 69/103 (66.99%), Postives = 73/103 (70.87%), Query Frame = 1
Query:   91 KGLITGKTTIXXXXXXXXXX--PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 393
            KGL+  KTT             PVSRSSRAGLQFPVGR+HR LK+              Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL
Sbjct:    7 KGLLAAKTTAAKSAEKDKGKKAPVSRSSRAGLQFPVGRIHRQLKQRTQANGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 109          

HSP 2 Score: 29.261 bits (64), Expect = 4.851e-30
Identity = 16/22 (72.73%), Postives = 18/22 (81.82%), Query Frame = 3
Query:  405 LKETIAGGGVIPSYPTKSLINK 470
            +K TIAGGGVIP +  KSLINK
Sbjct:  113 IKGTIAGGGVIP-HIHKSLINK 133          
BLAST of EY691970 vs. ExPASy Swiss-Prot
Match: H2AV1_ORYSJ (Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica GN=Os03g0162200 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.071e-29
Identity = 69/104 (66.35%), Postives = 72/104 (69.23%), Query Frame = 1
Query:   91 KGLITGKTTIXXXXXXXXXX---PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 393
            KGL+  KTT              PVSRSSRAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL
Sbjct:    7 KGLLAAKTTAAKSADKDKDKKKAPVSRSSRAGLQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 110          

HSP 2 Score: 29.261 bits (64), Expect = 1.071e-29
Identity = 16/22 (72.73%), Postives = 18/22 (81.82%), Query Frame = 3
Query:  405 LKETIAGGGVIPSYPTKSLINK 470
            +K TIAGGGVIP +  KSLINK
Sbjct:  114 IKGTIAGGGVIP-HIHKSLINK 134          
BLAST of EY691970 vs. ExPASy Swiss-Prot
Match: H2AV2_ORYSJ (Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica GN=Os10g0418000 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.395e-29
Identity = 69/105 (65.71%), Postives = 72/105 (68.57%), Query Frame = 1
Query:   91 KGLITGKTTIXXXXXXXXXX----PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 393
            KGL+  KTT               PVSRSSRAG+QFPVGR+HR LK               YTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL
Sbjct:    7 KGLLAAKTTAAKAAADKDKDRKKAPVSRSSRAGIQFPVGRIHRQLKGRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 111          

HSP 2 Score: 29.261 bits (64), Expect = 1.395e-29
Identity = 16/22 (72.73%), Postives = 18/22 (81.82%), Query Frame = 3
Query:  405 LKETIAGGGVIPSYPTKSLINK 470
            +K TIAGGGVIP +  KSLINK
Sbjct:  115 IKGTIAGGGVIP-HIHKSLINK 135          
BLAST of EY691970 vs. ExPASy Swiss-Prot
Match: H2AV2_ARATH (Probable histone H2A variant 2 OS=Arabidopsis thaliana GN=At2g38810 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.810e-29
Identity = 66/102 (64.71%), Postives = 72/102 (70.59%), Query Frame = 1
Query:   91 KGLITGKTTIXXXXXXXXXXP-VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 393
            KGL+  KTT             +SRSSRAG+QFPVGR+HR LK+              YTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL
Sbjct:    7 KGLLAAKTTAAAANKDSVKKKSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 108          

HSP 2 Score: 28.8758 bits (63), Expect = 6.810e-29
Identity = 15/22 (68.18%), Postives = 18/22 (81.82%), Query Frame = 3
Query:  405 LKETIAGGGVIPSYPTKSLINK 470
            +K TIAGGGVIP +  KSL+NK
Sbjct:  112 IKGTIAGGGVIP-HIHKSLVNK 132          
BLAST of EY691970 vs. ExPASy Swiss-Prot
Match: H2AV1_ARATH (Histone H2A variant 1 OS=Arabidopsis thaliana GN=H2AV PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 8.867e-29
Identity = 65/102 (63.73%), Postives = 71/102 (69.61%), Query Frame = 1
Query:   91 KGLITGKT-TIXXXXXXXXXXPVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 393
            KGL+  KT             P+SRS+RAG+QFPVGR+HR LK               YTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL
Sbjct:    7 KGLVAAKTMAANKDKDKDKKKPISRSARAGIQFPVGRIHRQLKTRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 108          

HSP 2 Score: 29.261 bits (64), Expect = 8.867e-29
Identity = 16/22 (72.73%), Postives = 18/22 (81.82%), Query Frame = 3
Query:  405 LKETIAGGGVIPSYPTKSLINK 470
            +K TIAGGGVIP +  KSLINK
Sbjct:  112 IKGTIAGGGVIP-HIHKSLINK 132          
BLAST of EY691970 vs. ExPASy Swiss-Prot
Match: H2AZL_XENTR (Histone H2A.Z-like OS=Xenopus tropicalis GN=h2a.zl PE=2 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 9.580e-28
Identity = 61/80 (76.25%), Postives = 65/80 (81.25%), Query Frame = 1
Query:  154 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 393
            ++RSSRAGLQFPVGR+HRLLK               YTAAILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEEL
Sbjct:   18 ITRSSRAGLQFPVGRIHRLLKNRTTSHGRVGGTAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEEL 97          

HSP 2 Score: 27.335 bits (59), Expect = 9.580e-28
Identity = 15/22 (68.18%), Postives = 17/22 (77.27%), Query Frame = 3
Query:  405 LKETIAGGGVIPSYPTKSLINK 470
            +K TIAGGGVIP +  KSLI K
Sbjct:  101 IKATIAGGGVIP-HIHKSLIGK 121          
BLAST of EY691970 vs. ExPASy Swiss-Prot
Match: H2AZL_XENLA (Histone H2A.Z-like OS=Xenopus laevis GN=h2a.zl1 PE=2 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 9.580e-28
Identity = 61/80 (76.25%), Postives = 65/80 (81.25%), Query Frame = 1
Query:  154 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 393
            ++RSSRAGLQFPVGR+HRLLK               YTAAILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEEL
Sbjct:   18 ITRSSRAGLQFPVGRIHRLLKNRTTSHGRVGGTAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEEL 97          

HSP 2 Score: 27.335 bits (59), Expect = 9.580e-28
Identity = 15/22 (68.18%), Postives = 17/22 (77.27%), Query Frame = 3
Query:  405 LKETIAGGGVIPSYPTKSLINK 470
            +K TIAGGGVIP +  KSLI K
Sbjct:  101 IKATIAGGGVIP-HIHKSLIGK 121          
BLAST of EY691970 vs. ExPASy Swiss-Prot
Match: H2AV_DROME (Histone H2A.v OS=Drosophila melanogaster GN=His2Av PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 3.554e-27
Identity = 61/80 (76.25%), Postives = 64/80 (80.00%), Query Frame = 1
Query:  154 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 393
            VSRS+RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL
Sbjct:   18 VSRSARAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 97          

HSP 2 Score: 27.7202 bits (60), Expect = 3.554e-27
Identity = 18/38 (47.37%), Postives = 23/38 (60.53%), Query Frame = 3
Query:  405 LKETIAGGGVIPSYPTKSLINKFLQKINSWTRHPSRIL 518
            +K TIAGGGVIP +  KSLI K  + +    R  + IL
Sbjct:  101 IKATIAGGGVIP-HIHKSLIGKKEETVQDPQRKGNVIL 137          
BLAST of EY691970 vs. ExPASy Swiss-Prot
Match: H2AV_STRPU (Histone H2A.V (Fragment) OS=Strongylocentrotus purpuratus GN=H2A.F/Z PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.681e-27
Identity = 61/80 (76.25%), Postives = 64/80 (80.00%), Query Frame = 1
Query:  154 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 393
            VSRS+RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL
Sbjct:   15 VSRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 94          

HSP 2 Score: 27.335 bits (59), Expect = 4.681e-27
Identity = 15/22 (68.18%), Postives = 17/22 (77.27%), Query Frame = 3
Query:  405 LKETIAGGGVIPSYPTKSLINK 470
            +K TIAGGGVIP +  KSLI K
Sbjct:   98 IKATIAGGGVIP-HIHKSLIGK 118          
The following BLAST results are available for this feature:
BLAST of EY691970 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
H2AV3_ARATH2.200e-3068.63Probable histone H2A variant 3 OS=Arabidopsis thal... [more]
H2AV3_ORYSJ4.851e-3066.99Probable histone H2A variant 3 OS=Oryza sativa sub... [more]
H2AV1_ORYSJ1.071e-2966.35Probable histone H2A variant 1 OS=Oryza sativa sub... [more]
H2AV2_ORYSJ1.395e-2965.71Probable histone H2A variant 2 OS=Oryza sativa sub... [more]
H2AV2_ARATH6.810e-2964.71Probable histone H2A variant 2 OS=Arabidopsis thal... [more]
H2AV1_ARATH8.867e-2963.73Histone H2A variant 1 OS=Arabidopsis thaliana GN=H... [more]
H2AZL_XENTR9.580e-2876.25Histone H2A.Z-like OS=Xenopus tropicalis GN=h2a.zl... [more]
H2AZL_XENLA9.580e-2876.25Histone H2A.Z-like OS=Xenopus laevis GN=h2a.zl1 PE... [more]
H2AV_DROME3.554e-2776.25Histone H2A.v OS=Drosophila melanogaster GN=His2Av... [more]
H2AV_STRPU4.681e-2776.25Histone H2A.V (Fragment) OS=Strongylocentrotus pur... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-102-H08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY691970 ID=EY691970; Name=EY691970; organism=Citrus sinensis; type=EST; length=850bp
AAAATTAAAAATAATTAATTATTTATTTAATTATTTTTAATTTAAAAGAA
GCTGTAGCAATTAGGCGGGAAAATGTCGGGCAAAGGAGCCAAAGGACTGA
TAACAGGCAAAACCACCATTAACAACAACAAGGATAAGGACAAGAAGAAA
CCCGTCTCCCGTTCTTCTCGTGCTGGTCTTCAGTTCCCAGTGGGAAGGGT
CCATCGTCTACTAAAGGAAAGGGCTGCTGCTCACGGAAGGGTTGGCGCAA
CAGCTGCTGTTTATACAGCAGCCATTTTGGAATATCTAACTGCCGAAGTG
TTGGAGTTGGCAGGGAATGCTAGCAAGGATTTGAAGGTCAAACGTATTAC
TCCAAGGCATTTGCAGCTTGCTATCCGAGGAGATGAAGAACTTTGACACT
CTCATTAAAGGAAACCATAGCCGGTGGAGGAGTTATTCCCTCATATCCCA
CCAAGTCCCTCATCAATAAATTCCTCCAAAAAATAAATTCGTGGACCCGT
CATCCTTCTCGGATTTTGTTTCTGGGTGAAAATATTAACGGAGCCGAAAT
ATTATACCTGAAAAATGGTTGCCACAAGAGGGGTTAAATGCCAAAGAACC
CACATTCCTCTCCATATCCCTCAATTCAGTCCACAACACATAATAGGACG
TCGTATTCATCTCGAGAAGAATTCAAACAGACTAACAGGTTCTATTCGAC
AGAAATCCACCCAGGTGTAGCCCTACAAACACGCTCAAGAACAAGCCAGT
GTTTTCAGACAGTCACATCAATTAGTATTTGCTAGCGCTTAGATAGTCTC
GCGCCCGTGCGTAAGAAGCCTGTACGCGACAGAACACAAAAAGCTCGAAG
back to top