EY691927

Overview
NameEY691927
Unique NameEY691927
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY691927_ssr33 microsatellite EY691927_ssr33:33..42. BLAST: Citrus ESTs to Prunus persica proteins V1
EY691927_ssr572 microsatellite EY691927_ssr572:572..583. BLAST: Citrus ESTs to Prunus persica proteins V1
EY691927_ssr89 microsatellite EY691927_ssr89:89..103. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY691927 vs. ExPASy Swiss-Prot
Match: VA726_ARATH (Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 8.937e-38
Identity = 72/97 (74.23%), Postives = 84/97 (86.60%), Query Frame = 1
Query:  130 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYDCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLESVKDEFVIQIGGGR 420
            M Q+SLIY+FVARG V+LAEYTEF GNF S+A QCLQKLP+SNNKFTY+CD HTFNYL DNG+TYCVV  ES+GRQIPMAFLE VK++F  + GGG+
Sbjct:    1 MGQQSLIYSFVARGTVILAEYTEFKGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLADNGFTYCVVVIESAGRQIPMAFLERVKEDFNKRYGGGK 97          
BLAST of EY691927 vs. ExPASy Swiss-Prot
Match: VA722_ARATH (Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 7.566e-37
Identity = 70/97 (72.16%), Postives = 86/97 (88.66%), Query Frame = 1
Query:  130 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYDCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLESVKDEFVIQIGGGR 420
            M+Q+SLIY+FVARG V+L E+T+F GNF SIA QCLQKLP+SNNKFTY+CD HTFNYLV+NG+TYCVVA +S+GRQIPMAFLE VK++F  + GGG+
Sbjct:    1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVDSAGRQIPMAFLERVKEDFNKRYGGGK 97          
BLAST of EY691927 vs. ExPASy Swiss-Prot
Match: VA725_ARATH (Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 9.881e-37
Identity = 70/97 (72.16%), Postives = 84/97 (86.60%), Query Frame = 1
Query:  130 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYDCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLESVKDEFVIQIGGGR 420
            M Q++LIY+FVARG V+L EYTEF GNF ++A QCLQKLP+SNNKFTY+CD HTFNYLV+NG+TYCVVA ES GRQIPMAFLE VK++F  + GGG+
Sbjct:   66 MGQQNLIYSFVARGTVILVEYTEFKGNFTAVAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVESVGRQIPMAFLERVKEDFNKRYGGGK 162          
BLAST of EY691927 vs. ExPASy Swiss-Prot
Match: VA721_ARATH (Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana GN=VAMP721 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.405e-36
Identity = 68/97 (70.10%), Postives = 86/97 (88.66%), Query Frame = 1
Query:  130 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYDCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLESVKDEFVIQIGGGR 420
            M+Q+SLIY+FVARG V+L E+T+F GNF SIA QCLQKLP+SNNKFTY+CD HTFNYLV++G+TYCVVA +S+GRQIPM+FLE VK++F  + GGG+
Sbjct:    1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVEDGFTYCVVAVDSAGRQIPMSFLERVKEDFNKRYGGGK 97          
BLAST of EY691927 vs. ExPASy Swiss-Prot
Match: VA723_ARATH (Vesicle-associated membrane protein 723 OS=Arabidopsis thaliana GN=VAMP723 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.611e-32
Identity = 63/113 (55.75%), Postives = 84/113 (74.34%), Query Frame = 1
Query:  130 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYDCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLESVKDEFVIQIGGGRRRNGSWQRREQRISSN 468
            M+Q+SL Y+F+ARG V+L E+T+F GNF S+A Q L+ LP+SNNKFTY+CD HTFN LV+NG+TYCVVA +S+GR+IPMAFLE VK++F  + GG +          +   SN
Sbjct:    1 MAQQSLFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVENGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQANSLNKEFGSN 113          
BLAST of EY691927 vs. ExPASy Swiss-Prot
Match: VA724_ARATH (Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 8.102e-31
Identity = 64/98 (65.31%), Postives = 81/98 (82.65%), Query Frame = 1
Query:  130 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNN-KFTYDCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLESVKDEFVIQIGGGR 420
            M Q+S IY+FVARG ++LAEYTEF+GNF SIA QCLQKLP+S+N KFTY+CD HTFN+LV++GY YCVVA +S  +QI +AFLE VK +F  + GGG+
Sbjct:    1 MGQESFIYSFVARGTMILAEYTEFTGNFPSIAAQCLQKLPSSSNSKFTYNCDHHTFNFLVEDGYAYCVVAKDSLSKQISIAFLERVKADFKKRYGGGK 98          
BLAST of EY691927 vs. ExPASy Swiss-Prot
Match: VA727_ARATH (Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.058e-30
Identity = 59/89 (66.29%), Postives = 76/89 (85.39%), Query Frame = 1
Query:  130 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYDCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLESVKDEF 396
            MSQK LIY+FVA+G VVLAE+T +SGNF++IA QCLQKLP +++K+TY CD HTFN+LVDNG+ + VVADES+GR +P  FLE VK++F
Sbjct:    1 MSQKGLIYSFVAKGTVVLAEHTPYSGNFSTIAVQCLQKLPTNSSKYTYSCDGHTFNFLVDNGFVFLVVADESTGRSVPFVFLERVKEDF 89          
BLAST of EY691927 vs. ExPASy Swiss-Prot
Match: VAM7B_DICDI (Vesicle-associated membrane protein 7B OS=Dictyostelium discoideum GN=vamp7B PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.276e-14
Identity = 38/89 (42.70%), Postives = 57/89 (64.04%), Query Frame = 1
Query:  145 LIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYDCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLESVKDEFVIQIG 411
            +IY+ VARG+ VLAE+T  +GNF +I  + L  +P ++ K +Y  + + F+YLV +  TY  +ADE  GR+IP  FL+ VK+ F    G
Sbjct:    3 IIYSLVARGSSVLAEFTSTNGNFVTITRRILDLIPPNDTKMSYVYEKYIFHYLVSDTLTYLCMADEEFGRRIPFTFLDDVKNRFKSMYG 91          
BLAST of EY691927 vs. ExPASy Swiss-Prot
Match: VA711_ARATH (Vesicle-associated membrane protein 711 OS=Arabidopsis thaliana GN=VAMP711 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.217e-12
Identity = 38/91 (41.76%), Postives = 58/91 (63.74%), Query Frame = 1
Query:  142 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASN-NKFTYDCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLESVKDEFVIQIG 411
            +++YA VARG VVL+E+T  S N ++IA Q L+K+P  N +  +Y  D + F+    +G T   +A+E++GR+IP AFLE +   FV   G
Sbjct:    2 AILYALVARGTVVLSEFTATSTNASTIAKQILEKVPGDNDSNVSYSQDRYVFHVKRTDGLTVLCMAEETAGRRIPFAFLEDIHQRFVRTYG 92          
BLAST of EY691927 vs. ExPASy Swiss-Prot
Match: VA713_ARATH (Vesicle-associated membrane protein 713 OS=Arabidopsis thaliana GN=VAMP713 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.100e-11
Identity = 38/92 (41.30%), Postives = 58/92 (63.04%), Query Frame = 1
Query:  142 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPA--SNNKFTYDCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLESVKDEFVIQIG 411
            ++I+A VARG VVL+E++  S N +SI+ Q L+KLP   S++  +Y  D + F+    +G T   +ADE++GR IP AFL+ +   FV   G
Sbjct:    2 AIIFALVARGTVVLSEFSATSTNASSISKQILEKLPGNDSDSHMSYSQDRYIFHVKRTDGLTVLCMADETAGRNIPFAFLDDIHQRFVKTYG 93          
The following BLAST results are available for this feature:
BLAST of EY691927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
VA726_ARATH8.937e-3874.23Putative vesicle-associated membrane protein 726 O... [more]
VA722_ARATH7.566e-3772.16Vesicle-associated membrane protein 722 OS=Arabido... [more]
VA725_ARATH9.881e-3772.16Vesicle-associated membrane protein 725 OS=Arabido... [more]
VA721_ARATH6.405e-3670.10Vesicle-associated membrane protein 721 OS=Arabido... [more]
VA723_ARATH5.611e-3255.75Vesicle-associated membrane protein 723 OS=Arabido... [more]
VA724_ARATH8.102e-3165.31Vesicle-associated membrane protein 724 OS=Arabido... [more]
VA727_ARATH1.058e-3066.29Vesicle-associated membrane protein 727 OS=Arabido... [more]
VAM7B_DICDI5.276e-1442.70Vesicle-associated membrane protein 7B OS=Dictyost... [more]
VA711_ARATH2.217e-1241.76Vesicle-associated membrane protein 711 OS=Arabido... [more]
VA713_ARATH1.100e-1141.30Vesicle-associated membrane protein 713 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-102-C12-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY691927 ID=EY691927; Name=EY691927; organism=Citrus sinensis; type=EST; length=873bp
GCAAAGCATAGCAACAAACAAAATTAGGAGAGGAGAGAGAGACCTCTNTG
GAGCTTTAAAACAAAATAAAAAATAAAAACAAGCCCAGATCTCATCTCAT
CTCAACTCGACTCAATTAGTCTCATCAAAATGAGCCAGAAATCGCTGATC
TACGCCTTCGTGGCGCGCGGAAATGTTGTGCTTGCTGAGTACACTGAGTT
CAGTGGCAATTTCAACTCCATAGCCTATCAGTGCCTCCAGAAACTCCCTG
CTTCCAACAACAAGTTCACTTACGACTGTGATGCTCACACCTTCAATTAT
CTCGTCGATAATGGTTACACATATTGTGTGGTCGCAGATGAATCGTCCGG
AAGACAAATACCGATGGCTTTTCTGGAGAGCGTGAAGGATGAATTTGTTA
TCCAAATAGGGGGGGGGAGAAGAAGAAACGGATCCTGGCAAAGGAGGGAG
CAGAGGATATCGTCCAACCATGTAAGAATAAAAGCAGTACGAAGAAACAA
AAACAAAAAAAAAAGAAAAAGATAGAGAAAGATCAGGGAAAAAAATCCAA
GAAAGAAGGAAGAAAGAGAAGAGAAAGAAAGAAGAGACTTGAATGTGAGA
TGACCAAGTAATGAAAACAGAAAAAAGAAAAGAGAAAAAGAGCAAGAAAA
ACGAGTCAAGGAAGACACAGCGAAGCAACAAGAAATTAGTGGAGAGAGAA
AATAAAGGCAGAAAGAAAGAGACGAGAGAACAAAAGCAACAAAAAACAAA
CGAAAAAGAGAAAGAAAAAAACAAAACAACAGAACGGAAAACAGAGGGAC
GAAGAAAAGAAGAAAGTAAAAGGAGGAAAAAGGGAGAGGAAACAAAAACC
AAGAGCACAAAAGCTACCACGCA
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