EY691917

Overview
NameEY691917
Unique NameEY691917
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY691917_ssr476 microsatellite EY691917_ssr476:476..485. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY691917 vs. ExPASy Swiss-Prot
Match: ACT_PINCO (Actin (Fragment) OS=Pinus contorta PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.623e-26
Identity = 58/72 (80.56%), Postives = 63/72 (87.50%), Query Frame = 3 
Query:   12 GRVGAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAERMSKEITALATRNMKIQVQDPPK*KYRI 227
            G   AGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIA+RMSKEITALA  +MKI+V  PP+ KY +
Sbjct:   54 GMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSV 125
[Close]
BLAST of EY691917 vs. ExPASy Swiss-Prot
Match: ACT7_SOLTU (Actin-75 OS=Solanum tuberosum GN=AC75 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.623e-26
Identity = 58/72 (80.56%), Postives = 63/72 (87.50%), Query Frame = 3 
Query:   12 GRVGAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAERMSKEITALATRNMKIQVQDPPK*KYRI 227
            G   AGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIA+RMSKEITALA  +MKI+V  PP+ KY +
Sbjct:  270 GMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSV 341
[Close]
BLAST of EY691917 vs. ExPASy Swiss-Prot
Match: ACT6_TOBAC (Actin-103 (Fragment) OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.623e-26
Identity = 58/72 (80.56%), Postives = 63/72 (87.50%), Query Frame = 3 
Query:   12 GRVGAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAERMSKEITALATRNMKIQVQDPPK*KYRI 227
            G   AGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIA+RMSKEITALA  +MKI+V  PP+ KY +
Sbjct:  250 GMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSV 321
[Close]
BLAST of EY691917 vs. ExPASy Swiss-Prot
Match: ACT2_SOLLC (Actin-51 (Fragment) OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.623e-26
Identity = 58/72 (80.56%), Postives = 63/72 (87.50%), Query Frame = 3 
Query:   12 GRVGAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAERMSKEITALATRNMKIQVQDPPK*KYRI 227
            G   AGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIA+RMSKEITALA  +MKI+V  PP+ KY +
Sbjct:  250 GMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSV 321
[Close]
BLAST of EY691917 vs. ExPASy Swiss-Prot
Match: ACT1_DAUCA (Actin-1 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.300e-25
Identity = 58/70 (82.86%), Postives = 62/70 (88.57%), Query Frame = 3 
Query:   12 GRVGAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAERMSKEITALATRNMKIQVQDPPK*KY 221
            G   AGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIA+RMSKEITALA  +MKI+V  PP+ KY
Sbjct:  269 GMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKY 338
[Close]
BLAST of EY691917 vs. ExPASy Swiss-Prot
Match: ACT_GOSHI (Actin OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.698e-25
Identity = 57/72 (79.17%), Postives = 63/72 (87.50%), Query Frame = 3 
Query:   12 GRVGAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAERMSKEITALATRNMKIQVQDPPK*KYRI 227
            G   AGIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIA+RMSKEITALA  +MKI+V  PP+ KY +
Sbjct:  270 GMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSV 341
[Close]
BLAST of EY691917 vs. ExPASy Swiss-Prot
Match: ACT_COLSC (Actin OS=Coleochaete scutata PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.698e-25
Identity = 57/72 (79.17%), Postives = 63/72 (87.50%), Query Frame = 3 
Query:   12 GRVGAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAERMSKEITALATRNMKIQVQDPPK*KYRI 227
            G   AGIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIA+RMSKEITALA  +MKI+V  PP+ KY +
Sbjct:  270 GMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSV 341
[Close]
BLAST of EY691917 vs. ExPASy Swiss-Prot
Match: ACT8_SOLTU (Actin-79 (Fragment) OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.698e-25
Identity = 57/72 (79.17%), Postives = 63/72 (87.50%), Query Frame = 3 
Query:   12 GRVGAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAERMSKEITALATRNMKIQVQDPPK*KYRI 227
            G   AGIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIA+RMSKEITALA  +MKI+V  PP+ KY +
Sbjct:  250 GMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSV 321
[Close]
BLAST of EY691917 vs. ExPASy Swiss-Prot
Match: ACT5_TOBAC (Actin-93 (Fragment) OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.698e-25
Identity = 57/72 (79.17%), Postives = 63/72 (87.50%), Query Frame = 3 
Query:   12 GRVGAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAERMSKEITALATRNMKIQVQDPPK*KYRI 227
            G   AGIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIA+RMSKEITALA  +MKI+V  PP+ KY +
Sbjct:  250 GMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSV 321
[Close]
BLAST of EY691917 vs. ExPASy Swiss-Prot
Match: ACT5_SOLTU (Actin-66 (Fragment) OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.698e-25
Identity = 57/72 (79.17%), Postives = 63/72 (87.50%), Query Frame = 3 
Query:   12 GRVGAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAERMSKEITALATRNMKIQVQDPPK*KYRI 227
            G   AGIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIA+RMSKEITALA  +MKI+V  PP+ KY +
Sbjct:  250 GMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSV 321
The following BLAST results are available for this feature:
BLAST of EY691917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 344
Match NameE-valueIdentityDescription
ACT_PINCO7.623e-2680.56Actin (Fragment) OS=Pinus contorta PE=3 SV=1[more]
ACT7_SOLTU7.623e-2680.56Actin-75 OS=Solanum tuberosum GN=AC75 PE=3 SV=1[more]
ACT6_TOBAC7.623e-2680.56Actin-103 (Fragment) OS=Nicotiana tabacum PE=3 SV=... [more]
ACT2_SOLLC7.623e-2680.56Actin-51 (Fragment) OS=Solanum lycopersicum PE=3 S... [more]
ACT1_DAUCA1.300e-2582.86Actin-1 OS=Daucus carota PE=2 SV=1[more]
ACT_GOSHI1.698e-2579.17Actin OS=Gossypium hirsutum PE=3 SV=1[more]
ACT_COLSC1.698e-2579.17Actin OS=Coleochaete scutata PE=2 SV=1[more]
ACT8_SOLTU1.698e-2579.17Actin-79 (Fragment) OS=Solanum tuberosum PE=3 SV=1[more]
ACT5_TOBAC1.698e-2579.17Actin-93 (Fragment) OS=Nicotiana tabacum PE=3 SV=1[more]
ACT5_SOLTU1.698e-2579.17Actin-66 (Fragment) OS=Solanum tuberosum PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-102-B12-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY691917 ID=EY691917; Name=EY691917; organism=Citrus sinensis; type=EST; length=862bp
CCCGCGTCCGCGGACGCGTGGGTGCTGGTATTCATGAGACTACCTACAAC
TCCATCATGAAGTGTGATGTGGATATTAGAAAGGATCTGTATGGTAACAT
TGTTCTCAGTGGGGGTTCAACTATGTTCCCTGGTATTGCGGAACGTATGA
GCAAGGAAATCACAGCGCTTGCAACAAGAAACATGAAGATCCAGGTCCAG
GATCCACCAAAATGAAAATACAGAATATCGAAATGAACGAACAAAACTTA
CGTCCACTCCGCCCTTGACACCCGAAGCCCGAACCAAACAAGAAAGCAAA
AGAAAACAGACGCCCAAGAGGGCGGACAAAAAGGGGAAAAACAAAGAGAA
AGACACACAACGACAACAGACAGCAGAACGAAAACAAAACAAAAAAAGCA
ACAAAAAACAGAAAAGAACAAAAGAAAAAAAGAGAAGAGAAAAAAAAGAA
AAAAAACAAGAAAAAAGACAAAACAAGAGAGAGAGACAAAAGAGCGACAC
CGAACAACGCACGAGACAGAACGCGACACCAAGACACAACAAGACGAAGG
AAAAGAGACAAAAACAGCCAAGCGCAGACCCCCAAAGAACCCACAACCAG
CCACCGTCACACCGAGAACGACAAACGGACACAACAAACAAAACAACAGC
AGAGAAAACAAGAAAGACAACAACCAACAAGGACAAAAACACAAGCAAGA
CAGAAAAGCCAGAACCACACCAAGAAACACACAAAACAAGAAAACAAAGA
AGAACAAAGCCGAAAACAGGAACCAAAGAAAGCACGACGCACAAGCGAAC
AAGAAAAAAGAAAAGACACCAACCAAGACAGAGAGAGCAACCCACACGAA
AGAAACAGCCAA
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