EY690165

Overview
NameEY690165
Unique NameEY690165
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY690165 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.208e-41
Identity = 85/103 (82.52%), Postives = 92/103 (89.32%), Query Frame = 2
Query:    8 VRSKTGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFY-GKAAQQV-KVPVPEGCTDPAAANYDPTARSDDGSCNYQF 310
            V SK GPP+FEQPKMT+DKLL YG MLVQEQENVKRVQLADKY+SEAALGDAN+DAIK G+FY G+AAQQV  VPVPEGCTDP A NYDPTARSDDGSC Y+F
Sbjct:  374 VNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYGGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476          
BLAST of EY690165 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 9.276e-40
Identity = 77/99 (77.78%), Postives = 85/99 (85.86%), Query Frame = 2
Query:    8 VRSKTGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNY 304
            V SK GPP FEQP+MTL KL+EYG MLVQEQENVKRVQLAD+Y+S AALGDAN DAI  G+F+GKAAQQV +PV +GCTDP A NYDPTARSDDGSC Y
Sbjct:  372 VNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFGKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTY 470          
BLAST of EY690165 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.582e-39
Identity = 78/101 (77.23%), Postives = 86/101 (85.15%), Query Frame = 2
Query:    8 VRSKTGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 310
            V S+ GP TFEQPKMT++KLLEYG MLVQEQ+NVKRVQLAD Y+S+AALGDAN DA+K GSFYGK AQQ  +PVPEGCTD  A NYDPTARSDDGSC Y F
Sbjct:  364 VNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464          
BLAST of EY690165 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 4.603e-39
Identity = 77/102 (75.49%), Postives = 88/102 (86.27%), Query Frame = 2
Query:    8 VRSKTGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYGKAAQQV-KVPVPEGCTDPAAANYDPTARSDDGSCNYQF 310
            V S+ GPP FEQPKMT++KL+EYG MLV+EQENVKRVQLA++YLSEAALGDAN DA+K GSFYG+ AQQ   +PVPEGCTDP A N+DPTARSDDGSC Y F
Sbjct:  365 VNSREGPPEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYGQGAQQAGNLPVPEGCTDPVAKNFDPTARSDDGSCLYTF 466          
BLAST of EY690165 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 6.012e-39
Identity = 75/101 (74.26%), Postives = 85/101 (84.16%), Query Frame = 2
Query:    8 VRSKTGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 310
            V S+ GPP FEQP+MT +KL+EYG MLV EQENVKRVQLA+ YLS+AALGDAN DAI  G+FYGK AQQV +PVPEGCTDP A N+DPTARSDDG+C Y F
Sbjct:  374 VNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474          
BLAST of EY690165 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.101e-24
Identity = 53/65 (81.54%), Postives = 60/65 (92.31%), Query Frame = 2
Query:    8 VRSKTGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYGK 202
            V S+ GPPTF+QPKMT++KL+EYG MLVQEQENVKRVQLADKYLSEAALG ANDDA+K G+FYGK
Sbjct:  361 VNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYGK 425          
BLAST of EY690165 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.878e-24
Identity = 54/64 (84.38%), Postives = 58/64 (90.62%), Query Frame = 2
Query:    8 VRSKTGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 199
            V SK GPPTFEQPKMT++KLLEYG MLVQEQENVKRVQLADKYLSEAALGDAN DA+  G+FYG
Sbjct:  374 VNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437          
BLAST of EY690165 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.590e-23
Identity = 52/63 (82.54%), Postives = 60/63 (95.24%), Query Frame = 2
Query:    8 VRSKTGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFY 196
            V SK GPPTF+QPKM+LDKLL+YG MLVQEQENVKRVQLADKYL+EAALG+AN+DAIK+GSF+
Sbjct:  376 VNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438          
BLAST of EY690165 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.076e-23
Identity = 52/62 (83.87%), Postives = 57/62 (91.94%), Query Frame = 2
Query:    8 VRSKTGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSF 193
            V SK GPPTFEQPKMT+DKLL+YG MLV+EQENVKRVQLADKY+SEAALGDAN DAIK G+F
Sbjct:  374 VNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435          
BLAST of EY690165 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.030e-22
Identity = 52/63 (82.54%), Postives = 56/63 (88.89%), Query Frame = 2
Query:    8 VRSKTGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFY 196
            + S  GPPTFEQPKMT++KLLEYG MLVQEQENVKRVQLADKYL EAALGDAN DAI NGSF+
Sbjct:  378 LNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440          
The following BLAST results are available for this feature:
BLAST of EY690165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RCA1_LARTR2.208e-4182.52Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL9.276e-4077.78Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU1.582e-3977.23Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ4.603e-3975.49Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH6.012e-3974.26Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU1.101e-2481.54Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO1.878e-2484.38Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU1.590e-2382.54Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR2.076e-2383.87Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC1.030e-2282.54Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-058-C09-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY690165 ID=EY690165; Name=EY690165; organism=Citrus sinensis; type=EST; length=859bp
CCCACGCGTCCGCTCAAAGACCGGACCCCCAACTTTTGAGCAACCAAAAA
TGACTCTTGACAAGCTCCTTGAGTACGGAAGAATGCTTGTCCAAGAGCAG
GAGAATGTGAAGAGAGTCCAACTGGCCGACAAGTACTTGAGCGAGGCAGC
CCTTGGTGATGCTAATGATGATGCTATCAAGAATGGAAGTTTTTATGGTA
AAGCAGCACAACAGGTTAAAGTTCCTGTCCCTGAAGGCTGTACCGATCCA
GCTGCAGCAAACTATGATCCAACTGCTAGGAGCGACGATGGCAGCTGCAA
TTACCAATTTTAGTTTGTATTAGCCATTTAGGTATATTACAAAAGGAAAG
CCATGTCTAAACTTGCCATTGTGTAAATAATGTATACTTTTTCATCTTGG
GGGAGGGGCACACAAAGGGCGGCCGGTCTAGAGGCGGGAAGGGTAACGGG
GGGGTGGATGGGAGGGGGTGGGCTCTTCGCGAGGGAGCCCGGACTCCCAC
TACCAGGCCGCGCACACAAAAAACCAATAAAACAAAAAAAAAAGCACACG
CGACCACCCGCACACAGCGACAGCCAGACCAACCAACACCCGCCGCAACA
CAACACGACGCCGAGAGCGCCGGCAGCGCGGCCGGCGCCCGTCGGCGGCC
AATGCGGAGGCCCGGCGACGCCCACGGCCCCACGCCCAACCCGGCCCCCG
CCACGGGGGAGGGAGCGGGCGGGGGCGGGGGGCGACACGCGAGCGACCCG
ACACCACCCGCGGCGGAGACAGCCCCACGGAGNCCAGAGGCGCCACCCAC
CACAATACCGGCCCCCACACACACCCCATCACATACAACCGCCGAGACGC
CCCAACGAC
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