EY690157

Overview
NameEY690157
Unique NameEY690157
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY690157 vs. ExPASy Swiss-Prot
Match: RS18_ARATH (40S ribosomal protein S18 OS=Arabidopsis thaliana GN=RPS18A PE=1 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.284e-54
Identity = 105/113 (92.92%), Postives = 110/113 (97.35%), Query Frame = 3
Query:  102 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRHDLEKEKE 440
            VANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLR DLE+ K+
Sbjct:    4 VANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKK 116          
BLAST of EY690157 vs. ExPASy Swiss-Prot
Match: RS18_BRABE (40S ribosomal protein S18 OS=Branchiostoma belcheri GN=RPS18 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.472e-42
Identity = 80/113 (70.80%), Postives = 100/113 (88.50%), Query Frame = 3
Query:  102 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRHDLEKEKE 440
            V  E FQHILRV+NTN+DG++KIMFALTSIKG+GRR +NIVCKKAD+D++KRAGELS  E++ L+ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N+LD KLR DLE+ K+
Sbjct:    4 VIPEKFQHILRVMNTNIDGRRKIMFALTSIKGVGRRYSNIVCKKADIDLSKRAGELSDEEVERLITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVMANSLDNKLREDLERLKK 116          
BLAST of EY690157 vs. ExPASy Swiss-Prot
Match: RS18_AEQIR (40S ribosomal protein S18 OS=Aequipecten irradians GN=RPS18 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.280e-42
Identity = 79/110 (71.82%), Postives = 99/110 (90.00%), Query Frame = 3
Query:  111 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRHDLEKEKE 440
            E FQHILRV+NTN+DGK+KIMFA+T+IKG+GRR AN+VCKKADVD+ KRAGELS  E++ ++ +++NPRQ+KIP+WFLNRQKD KDGKYSQV+SNALD KLR DLE+ K+
Sbjct:    7 EKFQHILRVMNTNIDGKRKIMFAMTAIKGMGRRYANVVCKKADVDITKRAGELSEDEIERVITIMSNPRQYKIPNWFLNRQKDVKDGKYSQVMSNALDNKLREDLERLKK 116          
BLAST of EY690157 vs. ExPASy Swiss-Prot
Match: RS18_DANRE (40S ribosomal protein S18 OS=Danio rerio GN=rps18 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.990e-39
Identity = 74/113 (65.49%), Postives = 97/113 (85.84%), Query Frame = 3
Query:  102 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRHDLEKEKE 440
            V  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+NKRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR DLE+ K+
Sbjct:    4 VIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLNKRAGELTEDEVERVVTIMQNPRQYKIPDWFLNRQKDIKDGKYSQVLANGLDNKLREDLERLKK 116          
BLAST of EY690157 vs. ExPASy Swiss-Prot
Match: RS18_ICTPU (40S ribosomal protein S18 OS=Ictalurus punctatus GN=rps18 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 7.561e-39
Identity = 73/113 (64.60%), Postives = 97/113 (85.84%), Query Frame = 3
Query:  102 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRHDLEKEKE 440
            V  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D++KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR DLE+ K+
Sbjct:    4 VIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLSKRAGELTEDEVERVVTIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKK 116          
BLAST of EY690157 vs. ExPASy Swiss-Prot
Match: RS18_RAT (40S ribosomal protein S18 OS=Rattus norvegicus GN=Rps18 PE=1 SV=3)

HSP 1 Score: 160.614 bits (405), Expect = 9.875e-39
Identity = 73/113 (64.60%), Postives = 96/113 (84.96%), Query Frame = 3
Query:  102 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRHDLEKEKE 440
            V  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR DLE+ K+
Sbjct:    4 VIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKK 116          
BLAST of EY690157 vs. ExPASy Swiss-Prot
Match: RS18_PIG (40S ribosomal protein S18 OS=Sus scrofa GN=RPS18 PE=2 SV=3)

HSP 1 Score: 160.614 bits (405), Expect = 9.875e-39
Identity = 73/113 (64.60%), Postives = 96/113 (84.96%), Query Frame = 3
Query:  102 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRHDLEKEKE 440
            V  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR DLE+ K+
Sbjct:    4 VIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKK 116          
BLAST of EY690157 vs. ExPASy Swiss-Prot
Match: RS18_MOUSE (40S ribosomal protein S18 OS=Mus musculus GN=Rps18 PE=2 SV=3)

HSP 1 Score: 160.614 bits (405), Expect = 9.875e-39
Identity = 73/113 (64.60%), Postives = 96/113 (84.96%), Query Frame = 3
Query:  102 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRHDLEKEKE 440
            V  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR DLE+ K+
Sbjct:    4 VIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKK 116          
BLAST of EY690157 vs. ExPASy Swiss-Prot
Match: RS18_HUMAN (40S ribosomal protein S18 OS=Homo sapiens GN=RPS18 PE=1 SV=3)

HSP 1 Score: 160.614 bits (405), Expect = 9.875e-39
Identity = 73/113 (64.60%), Postives = 96/113 (84.96%), Query Frame = 3
Query:  102 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRHDLEKEKE 440
            V  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR DLE+ K+
Sbjct:    4 VIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKK 116          
BLAST of EY690157 vs. ExPASy Swiss-Prot
Match: RS18_CAPHI (40S ribosomal protein S18 OS=Capra hircus GN=RPS18 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 9.875e-39
Identity = 73/113 (64.60%), Postives = 96/113 (84.96%), Query Frame = 3
Query:  102 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRHDLEKEKE 440
            V  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR DLE+ K+
Sbjct:    4 VIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKK 116          
The following BLAST results are available for this feature:
BLAST of EY690157 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RS18_ARATH1.284e-5492.9240S ribosomal protein S18 OS=Arabidopsis thaliana ... [more]
RS18_BRABE1.472e-4270.8040S ribosomal protein S18 OS=Branchiostoma belcher... [more]
RS18_AEQIR3.280e-4271.8240S ribosomal protein S18 OS=Aequipecten irradians... [more]
RS18_DANRE1.990e-3965.4940S ribosomal protein S18 OS=Danio rerio GN=rps18 ... [more]
RS18_ICTPU7.561e-3964.6040S ribosomal protein S18 OS=Ictalurus punctatus G... [more]
RS18_RAT9.875e-3964.6040S ribosomal protein S18 OS=Rattus norvegicus GN=... [more]
RS18_PIG9.875e-3964.6040S ribosomal protein S18 OS=Sus scrofa GN=RPS18 P... [more]
RS18_MOUSE9.875e-3964.6040S ribosomal protein S18 OS=Mus musculus GN=Rps18... [more]
RS18_HUMAN9.875e-3964.6040S ribosomal protein S18 OS=Homo sapiens GN=RPS18... [more]
RS18_CAPHI9.875e-3964.6040S ribosomal protein S18 OS=Capra hircus GN=RPS18... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-058-B09-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY690157 ID=EY690157; Name=EY690157; organism=Citrus sinensis; type=EST; length=837bp
CCCACGCGTCCGCCCACGCCTCCGACTTGCTGCAGCTTCATTTGTAGCCG
AAGAGCCTCTCTTCTCTTCATCATCAATCCTCACAATCGAAAATGTCTCT
GGTGGCGAACGAAGATTTTCAGCACATTTTGCGTGTGCTGAACACTAACG
TCGACGGGAAGCAGAAGATTATGTTTGCTCTTACTTCAATTAAGGGTATT
GGAAGGCGACTGGCTAACATCGTTTGCAAGAAAGCTGATGTTGACATGAA
CAAGAGGGCCGGTGAACTATCTGCTGCTGAACTTGACAATCTCATGGTCG
TTGTTGCAAATCCCCGACAGTTTAAAATCCCTGATTGGTTCTTGAACAGA
CAGAAGGATTACAAAGATGGAAAGTATTCTCAGGTTGTATCCAATGCACT
GGACATGAAGTTGAGACATGATTTGGAGAAAGAGAAAGAAGATCAGGAAC
CAACGATGGTATAAAGGCCTCCTGGGGGCTTCGTGCCCCAACACCAACCC
AAATCAAAACAAAAAAAAAAATAAAAAGAATATATAAAACAACCCCAAAA
ACCAAACCTAACGGAACACAAAAAGAGAAACCAGCGTCCACATGAGCCGA
CCACCCCACGCACCCGAACCGACAACGCAAGAAGCACACACAACAGCCAA
CACAGACAAAAAAACACGCAAAAAAAAACACACCAAACAAACACAACGAA
ACGAAAAAAAAGACACACACCCAACCCGGCTCACAACAACAACGCCAACC
ACACGACCAAAAACCAGCGCCGGGCGCACGCCCACAAAAGCAAAGAAAGA
AACGCCGGCCCAGGCAAGGCCCAGCGCGGGAGCGAGG
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