EY690145

Overview
NameEY690145
Unique NameEY690145
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length424
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7056 contig Csv1_Contig7056:1237..1660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY690145 vs. ExPASy Swiss-Prot
Match: PGLR_VITVI (Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 4.586e-53
Identity = 93/121 (76.86%), Postives = 104/121 (85.95%), Query Frame = 3 
Query:   12 GNYGSHADNHYDPKALPVIQGINYRDIVADNVSMAARLEGISGDPFTGICIANATIGMAAKHKKVPWTCADIGGMTSGVTPPPCELLPDQGPEKIRACDFPTESLPIDMVEMKKCTYRINY 374
            GNYGSHADNHYDPKA PVIQGINYRD+VA+NVSMAARLEGI  DPFTGICI+N TI +AAK KKVPWTC D+ G++SGVTP PC  LPDQGPEK   C+FP ESLPID VE++KC+Y INY
Sbjct:  369 GNYGSHADNHYDPKAFPVIQGINYRDMVAENVSMAARLEGIPSDPFTGICISNVTIHLAAKAKKVPWTCTDVEGISSGVTPTPCSTLPDQGPEKTSLCNFPAESLPIDTVELQKCSYGINY 489
The following BLAST results are available for this feature:
BLAST of EY690145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PGLR_VITVI4.586e-5376.86Probable polygalacturonase OS=Vitis vinifera GN=GS... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-058-A06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY690145 ID=EY690145; Name=EY690145; organism=Citrus sinensis; type=EST; length=424bp
CCACGCGTCCGGGCAATTATGGATCGCATGCCGATAATCACTATGATCCA
AAGGCTCTGCCCGTGATTCAAGGAATTAATTATAGGGACATTGTGGCGGA
TAATGTGTCCATGGCTGCTAGATTAGAGGGAATTTCCGGTGACCCATTTA
CAGGTATTTGCATTGCTAATGCGACAATTGGAATGGCGGCCAAGCATAAG
AAAGTACCGTGGACTTGTGCTGATATTGGAGGGATGACCAGTGGCGTGAC
TCCTCCACCCTGTGAATTGTTACCTGATCAAGGACCTGAGAAAATAAGAG
CCTGTGACTTCCCGACTGAGAGTCTACCAATTGATATGGTGGAGATGAAA
AAGTGTACTTACAGAATTAATTATTTGTGAATTTCCTTTGCTAGTATAAG
CAGGACAACAAAAAAAAAAAAAAA
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