EY690137

Overview
NameEY690137
Unique NameEY690137
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2065 contig Csv1_Contig2065:140..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY690137 vs. ExPASy Swiss-Prot
Match: RL40_NICSY (60S ribosomal protein L40 OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.478e-24
Identity = 50/52 (96.15%), Postives = 52/52 (100.00%), Query Frame = 2
Query:  149 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHNNQLRPKKKIK 304
            IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCR+KKCGH+NQLRPKKKIK
Sbjct:    1 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRRKKCGHSNQLRPKKKIK 52          
BLAST of EY690137 vs. ExPASy Swiss-Prot
Match: RL40_ORYSJ (60S ribosomal protein L40 OS=Oryza sativa subsp. japonica GN=Ub-CEP52-1 PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 7.639e-24
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 2
Query:  149 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHNNQLRPKKKIK 304
            IIEPSL ALARKYNQDKMICRKCYARLHPRAVNCRKKKCGH+NQLRPKKKIK
Sbjct:    1 IIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 52          
BLAST of EY690137 vs. ExPASy Swiss-Prot
Match: RL40_ARATH (60S ribosomal protein L40 OS=Arabidopsis thaliana GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.639e-24
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 2
Query:  149 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHNNQLRPKKKIK 304
            IIEPSLM LARKYNQDKMICRKCYARLHPRAVNCRKKKCGH+NQLRPKKKIK
Sbjct:    1 IIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 52          
BLAST of EY690137 vs. ExPASy Swiss-Prot
Match: RL40_BRARA (60S ribosomal protein L40 OS=Brassica rapa PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.702e-23
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 2
Query:  149 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHNNQLRPKKKIK 304
            IIEPSLMALARKYNQ KMICRKCYARLHPRAVNCRKKKCGH+NQLRPKKKIK
Sbjct:    1 IIEPSLMALARKYNQAKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 52          
BLAST of EY690137 vs. ExPASy Swiss-Prot
Match: RL40_CHLRE (60S ribosomal protein L40 OS=Chlamydomonas reinhardtii GN=UBI1 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.338e-22
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 2
Query:  149 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHNNQLRPKKKIK 304
            IIEPSL ALARKYNQ+KMICRKCYARLHPRA NCRKK CGH NQLRPKKK+K
Sbjct:    1 IIEPSLQALARKYNQEKMICRKCYARLHPRAKNCRKKSCGHTNQLRPKKKLK 52          
BLAST of EY690137 vs. ExPASy Swiss-Prot
Match: RL40_SHEEP (60S ribosomal protein L40 OS=Ovis aries GN=UBA52 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.052e-21
Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 2
Query:  149 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHNNQLRPKKKIK 304
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52          
BLAST of EY690137 vs. ExPASy Swiss-Prot
Match: RL40_RAT (60S ribosomal protein L40 OS=Rattus norvegicus GN=Uba52 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.052e-21
Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 2
Query:  149 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHNNQLRPKKKIK 304
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52          
BLAST of EY690137 vs. ExPASy Swiss-Prot
Match: RL40_PONAB (60S ribosomal protein L40 OS=Pongo abelii GN=UBA52 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.052e-21
Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 2
Query:  149 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHNNQLRPKKKIK 304
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52          
BLAST of EY690137 vs. ExPASy Swiss-Prot
Match: RL40_PIG (60S ribosomal protein L40 OS=Sus scrofa GN=UBA52 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.052e-21
Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 2
Query:  149 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHNNQLRPKKKIK 304
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52          
BLAST of EY690137 vs. ExPASy Swiss-Prot
Match: RL40_OPHHA (60S ribosomal protein L40 OS=Ophiophagus hannah PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.052e-21
Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 2
Query:  149 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHNNQLRPKKKIK 304
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52          
The following BLAST results are available for this feature:
BLAST of EY690137 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
RL40_NICSY4.478e-2496.1560S ribosomal protein L40 OS=Nicotiana sylvestris ... [more]
RL40_ORYSJ7.639e-2496.1560S ribosomal protein L40 OS=Oryza sativa subsp. j... [more]
RL40_ARATH7.639e-2496.1560S ribosomal protein L40 OS=Arabidopsis thaliana ... [more]
RL40_BRARA1.702e-2396.1560S ribosomal protein L40 OS=Brassica rapa PE=3 SV... [more]
RL40_CHLRE9.338e-2288.4660S ribosomal protein L40 OS=Chlamydomonas reinhar... [more]
RL40_SHEEP6.052e-2186.5460S ribosomal protein L40 OS=Ovis aries GN=UBA52 P... [more]
RL40_RAT6.052e-2186.5460S ribosomal protein L40 OS=Rattus norvegicus GN=... [more]
RL40_PONAB6.052e-2186.5460S ribosomal protein L40 OS=Pongo abelii GN=UBA52... [more]
RL40_PIG6.052e-2186.5460S ribosomal protein L40 OS=Sus scrofa GN=UBA52 P... [more]
RL40_OPHHA6.052e-2186.5460S ribosomal protein L40 OS=Ophiophagus hannah PE... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-057-H06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY690137 ID=EY690137; Name=EY690137; organism=Citrus sinensis; type=EST; length=574bp
AGCCAAGATCCAAGACAAGGAGGGTATTCCGCCGGACCAGCATAGACTTA
TCTTCGCTGGGAAGCAACTTGAGGATGGCCGTACTCTAACCGATTACAAT
ATCCAAAAGGAGTCAACTCTGCGTCTGGTTCTGAGGCTTCGTGGTGGTAT
TATTGAGCCTTCTTTGATGGCATTGGCAAGGAAGTATAACCAGGACAAGA
TGATCTGCCGAAAATGTTATGCACGCCTGCACCCCCGTGCTGTGAACTGC
AGGAAGAAGAAATGTGGGCACAACAACCAGCTGAGGCCAAAGAAGAAGAT
CAAGTAGATATTCTGCAGAGAAATGCTACATTTTATACTGAAACAGGATG
TTTTGCCTAGAATATGTAGCATCAACTATTGCCTAGTAATAGTTGTCACT
TAGTACGTGATTTCTGTTTCAAGATGTTTCCAGGGTTGAGAGTATTTGTA
AACTGATTACTATCGCCTCTATGTGCCCGTGACATTGAGCAATTTATTAA
TAACTTGCCTGAATCTACTATTTTCTTAAAAAAAAAAAAAAAAAAAAAAA
AAGGGAAGACAGACATCTAAAGAT
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