EY690134

Overview
NameEY690134
Unique NameEY690134
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY690134 vs. ExPASy Swiss-Prot
Match: TRPC_ARATH (Indole-3-glycerol phosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=At2g04400 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 6.233e-22
Identity = 67/155 (43.23%), Postives = 95/155 (61.29%), Query Frame = 1
Query:   40 MEGLVSPKTTP-RILFPTLNRRPSKFSIVRSVPASAMDA--HRRNGVGFTPIRAQKAETKDGSATISSVMEDAETALKAKEWEVGMLINEVAASQGIKIRRRPPTGPPLHYVGPFQFRI-QNEGNTPRNILEEIVWAQGTGKVSPLPQRRKLSML 492
            MEGLV  +  P ++  P+L R  +  SI RS+   AMD   + R    F+ IRAQ+++ K+  A  SS +ED    L+ KEWEV M   E+A SQGI+IRR+PP+  PL Y GPF+ R+  N+ ++PRNILEEI W +   +VS + +   L +L
Sbjct:    1 MEGLVPVQRLPIKVASPSLYRCNNSVSIRRSISGFAMDRKINFRAPSQFS-IRAQQSDLKESLAVSSSSVEDKGNVLRIKEWEVEMYQEELAISQGIRIRRKPPSKAPLGYSGPFELRLHNNDADSPRNILEEITWYKDV-EVSRMKELNPLDVL 153          
The following BLAST results are available for this feature:
BLAST of EY690134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TRPC_ARATH6.233e-2243.23Indole-3-glycerol phosphate synthase, chloroplasti... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-057-H03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY690134 ID=EY690134; Name=EY690134; organism=Citrus sinensis; type=EST; length=820bp
CAGCCTTGGCTTAGGGATTCACTATATAAAAGAGTAAAAATGGAGGGCTT
GGTTTCTCCTAAAACGACACCCCGGATTTTGTTTCCGACGCTAAATCGCA
GACCCAGTAAGTTTTCAATCGTACGGTCCGTTCCGGCCTCCGCAATGGAC
GCGCACAGACGAAACGGTGTCGGTTTCACGCCCATCCGAGCTCAAAAGGC
TGAGACCAAGGATGGGTCGGCTACAATTTCCTCAGTGATGGAAGATGCTG
AAACTGCACTTAAAGCTAAAGAGTGGGAAGTGGGGATGCTGATAAATGAA
GTCGCTGCTAGCCAGGGTATAAAAATTAGGAGACGTCCACCGACAGGGCC
CCCTTTGCACTATGTGGGACCTTTTCAGTTCCGGATACAGAATGAGGGCA
ATACACCTCGTAACATTTTGGAGGAGATCGTATGGGCACAAGGAACGGGA
AAAGTTTCTCCATTACCACAAAGGAGGAAATTATCGATGCTGACAACCAG
CCCTTGACAGTGCTCCCTGCCTCCAAAAATTTCATTGGGCGCTATTCTGG
CTGGAAGTAAACCAACTCGCACTTCCCGCTAAACATGGTCAGAAACAAGA
ACAAGCATCATGGCAGCGCAGACACGATCGAACACCGCTATTGACACGCG
GCGGAGACGCGGCCGACACATCAGGCGGAGAGGGGGCGAGGAGTCTCATG
AGAGACGACACGAACCGACCCCCACATCTCAGGGGACAGGCGCGGCAGCG
GCTGCAACCATGGTCCTGGCCTCACGAACCGAAACAGCCCCCTCCANTAC
GAAAAGGCAAAACTGGCAAA
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