EY690075

Overview
NameEY690075
Unique NameEY690075
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length819
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY690075_ssr301 microsatellite EY690075_ssr301:301..310. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY690075 vs. ExPASy Swiss-Prot
Match: MAN5_ARATH (Mannan endo-1,4-beta-mannosidase 5 OS=Arabidopsis thaliana GN=MAN5 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.255e-18
Identity = 44/69 (63.77%), Postives = 54/69 (78.26%), Query Frame = 2 
Query:   11 KSAKRKSP*AGALIWQLFVEGMEEYNDDFGIVPWERTSTYKLLTEQSCGLGRISRLNLEKGNLKELCSH 217
            KSAKRK   AG L+WQLF+EGME +NDDFGIVP E+ S YKL+ EQSC LG+++   L++  LKELCSH
Sbjct:  362 KSAKRKKSGAGTLVWQLFMEGMETFNDDFGIVPHEQDSIYKLMIEQSCRLGKVTG-RLKEQKLKELCSH 429
[Close]
BLAST of EY690075 vs. ExPASy Swiss-Prot
Match: MAN2_ARATH (Mannan endo-1,4-beta-mannosidase 2 OS=Arabidopsis thaliana GN=MAN2 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.520e-15
Identity = 39/69 (56.52%), Postives = 48/69 (69.57%), Query Frame = 2 
Query:   11 KSAKRKSP*AGALIWQLFVEGMEEYNDDFGIVPWERTSTYKLLTEQSCGLGRISRLNLEKGNLKELCSH 217
            KSAKRK   AG L+WQ  +EGME +NDDFGIVPWE+ S  +L+ EQSC L RI+  +L      E+CSH
Sbjct:  363 KSAKRKRSGAGTLVWQFLIEGMEGFNDDFGIVPWEQDSIQRLMIEQSCRLSRITGRHLLDKKSIEMCSH 431
The following BLAST results are available for this feature:
BLAST of EY690075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
MAN5_ARATH9.255e-1863.77Mannan endo-1,4-beta-mannosidase 5 OS=Arabidopsis ... [more]
MAN2_ARATH2.520e-1556.52Mannan endo-1,4-beta-mannosidase 2 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-057-B01-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY690075 ID=EY690075; Name=EY690075; organism=Citrus sinensis; type=EST; length=819bp
CACGCGTCCGAAATCCGCCAAGAGAAAGAGCCCCTGAGCAGGTGCTTTAA
TCTGGCAACTATTTGTTGAAGGAATGGAAGAGTATAATGATGACTTTGGA
ATTGTTCCATGGGAAAGAACATCAACATACAAGCTGTTAACAGAACAATC
TTGCGGGTTGGGCAGAATCTCCCGACTGAATCTAGAGAAAGGAAACTTGA
AAGAATTGTGTTCCCATTGACAGAGAAAGTCTTTAATTCTTTGTAGTAGT
CTAGTAGATATTGGTTCTCTTTTGCAGTTTCAATTCGGCATTTAGCGAGG
GAGAGAGAGATGCAGTTCATTGGTTCTGTACTATATTGATCCCTCAGCCC
CATACATATGATGTAGTTGTCAGATGTGGGTGCATACTACAAATGGCGTC
GCTAATCATATGGCCATCTTGCATATGTTCTTAGAGCCAAGCTGATATAC
CTACAAAAACACCGCAGAGACAGGCGGGCCGCTCTAGACGCTTCACCCTA
CACTACACCTGCCTGCCACGGCCCGACCCCTTCTCTCAAGACACCTACAC
TCAAATCCCAGCCACGCATAGCACAAAACAGACGAACAAACAACCCCAAA
GCAACCTAATAAAACACCACAAAAAACCGCACAACCAGCCCGAGCCGAAG
CTACATAGCCTAAGGACAGCAGAAAAAAAAAGCCTCGCGTGCCAACGGCA
ACAGCACAGCCGCAAGACCACCGCCCGACAAAACCGGGGAACGCACCGAG
CACACCGGAGGGCAGCAACAGCACAACACGCAAATAACACAGCCAAAGCC
CACCAGAACATGGACAACC
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