EY690072

Overview
NameEY690072
Unique NameEY690072
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY690072 vs. ExPASy Swiss-Prot
Match: PSAG_ARATH (Photosystem I reaction center subunit V, chloroplastic OS=Arabidopsis thaliana GN=PSAG PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.182e-44
Identity = 65/74 (87.84%), Postives = 68/74 (91.89%), Query Frame = 3
Query:  345 QRENMTKRSLPEHNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFFG 566
            QREN+ K+ LPE NG THFEAGD RAKEYVSLLKSNDP+GFNIVDVLAWGSIGHIVAYYILATSSNGYDP FFG
Sbjct:   87 QRENVAKQGLPEQNGKTHFEAGDDRAKEYVSLLKSNDPIGFNIVDVLAWGSIGHIVAYYILATSSNGYDPSFFG 160          

HSP 2 Score: 61.6178 bits (148), Expect = 3.182e-44
Identity = 34/67 (50.75%), Postives = 46/67 (68.66%), Query Frame = 2
Query:  152 SPSTISFQGLEPLNTIARTS-LP*LATSDKKNSFGCIIGELSTPLVINLITDLSLLLGRFVFFNFTK 349
            +P++ISF GL PL     +S LP L+T+ +K+S   +  ELS  +VI+L T LSL LGRFVFFNF +
Sbjct:   22 NPNSISFHGLRPLRLGGSSSALPKLSTTGRKSSSAVVRAELSPSIVISLSTGLSLFLGRFVFFNFQR 88          
BLAST of EY690072 vs. ExPASy Swiss-Prot
Match: PSAG_SPIOL (Photosystem I reaction center subunit V, chloroplastic OS=Spinacia oleracea GN=PSAG PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.365e-38
Identity = 63/73 (86.30%), Postives = 68/73 (93.15%), Query Frame = 3
Query:  345 QRENMTKRSLPEHNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF 563
            QRENM K+ +PE NG++HFEAGD RAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILAT+SNGYDP FF
Sbjct:   96 QRENMAKQ-VPEQNGMSHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDPSFF 167          

HSP 2 Score: 49.2914 bits (116), Expect = 1.365e-38
Identity = 32/63 (50.79%), Postives = 37/63 (58.73%), Query Frame = 2
Query:  167 SFQGLEPL--NTIARTSLP*LATSDKKNSFGCIIGELSTPLVINLITDLSLLLGRFVFFNFTK 349
            SF GL PL  N  +  S   L+ S  + S  C   ELS  LVI+L T LSL LGRFVFFNF +
Sbjct:   36 SFSGLRPLKLNISSNNSSSSLSMSSARRSMTCR-AELSPSLVISLSTGLSLFLGRFVFFNFQR 97          
BLAST of EY690072 vs. ExPASy Swiss-Prot
Match: PSAG_HORVU (Photosystem I reaction center subunit V, chloroplastic OS=Hordeum vulgare GN=PSAG PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.673e-32
Identity = 59/74 (79.73%), Postives = 66/74 (89.19%), Query Frame = 3
Query:  345 QRENMTKRSLPEHNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFFG 566
            QREN+ K+ +PE NG THFEAGD RAKE+  +LKSNDPVGFN+VDVLAWGSIGHIVAYYILAT+SNGYDP FFG
Sbjct:   71 QRENVAKQ-VPEQNGKTHFEAGDERAKEFAGILKSNDPVGFNLVDVLAWGSIGHIVAYYILATTSNGYDPPFFG 143          

HSP 2 Score: 35.039 bits (79), Expect = 1.673e-32
Identity = 16/27 (59.26%), Postives = 21/27 (77.78%), Query Frame = 2
Query:  269 LSTPLVINLITDLSLLLGRFVFFNFTK 349
            L   +VI+L T LSL++GRFVFFNF +
Sbjct:   46 LEPSVVISLSTGLSLVMGRFVFFNFQR 72          
BLAST of EY690072 vs. ExPASy Swiss-Prot
Match: PSAG_TORRU (Photosystem I reaction center subunit V, chloroplastic OS=Tortula ruralis GN=PSAG PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.485e-14
Identity = 33/69 (47.83%), Postives = 48/69 (69.57%), Query Frame = 3
Query:  345 QRENMTKRSLPEHNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYD 551
            QR  +++  LPE NGV          + + S+LK+NDP GF +VDVLAWG++GH V ++ILAT++NGY+
Sbjct:   41 QRSMVSRHGLPEQNGVPTTRRVTAVRRRWWSMLKTNDPAGFTLVDVLAWGALGHAVGFFILATATNGYN 109          

HSP 2 Score: 23.483 bits (49), Expect = 4.485e-14
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2
Query:  272 STPLVINLITDLSLLLGRFVFFNFTK 349
            +T  +I+  T   L LGRFVF  F +
Sbjct:   17 NTSFIISASTAALLALGRFVFLPFQR 42          
The following BLAST results are available for this feature:
BLAST of EY690072 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PSAG_ARATH3.182e-4487.84Photosystem I reaction center subunit V, chloropla... [more]
PSAG_SPIOL1.365e-3886.30Photosystem I reaction center subunit V, chloropla... [more]
PSAG_HORVU1.673e-3279.73Photosystem I reaction center subunit V, chloropla... [more]
PSAG_TORRU4.485e-1447.83Photosystem I reaction center subunit V, chloropla... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-057-A08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY690072 ID=EY690072; Name=EY690072; organism=Citrus sinensis; type=EST; length=696bp
CCACGCGTCCGCATGAACGGCTTACTCCATCATCCATCTAGGGTCAACAA
GAACGAGGAAAACAAGGAACTCTAGGGGGAGAAAAGAAAAATGGCAGACT
CATCCTCCTTGCTCACACCCTCCACCATCACCGACCCAAAACCCAATATT
TTCGCCCTCCACCATCTCATTCCAAGGCCTAGAACCCCTCAACACCATAG
CCAGAACCTCCCTCCCCTAGCTCGCCACATCCGACAAAAAAAACAGCTTC
GGCTGCATTATAGGTGAACTGAGCACACCACTTGTCATCAACCTCATCAC
TGACCTCTCCTTGCTCTTGGGCAGGTTCGTCTTCTTCAACTTCACAAAGA
GAGAACATGACCAAACGAAGCTTGCCCGAGCACAATGGAGTCACCCACTT
TGAAGCCGGTGATGTTCGTGCCAAGGAATATGTTAGCCTCCTCAAATCCA
ACGACCCAGTTGGCTTTAACATTGTTGATGTTCTCGCTTGGGGTTCCATT
GGCCATATTGTCGCTTACTACATCTTGGCCACCTCCAGCAACGGCTATGA
TCCCAAGTTCTTTGGTTGATTTTGTTATTTGTACTGTCTCTCTTTTGTCT
CTTTTAGTTTCTTAATTTCTCAAGTGTTGCGCTTTGAATAGTTAATAAAT
TTCCTAGCATTTTAATTGGATGAAAAAAAAAAAAAAAAAAAAAGGG
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