EY728475

Overview
NameEY728475
Unique NameEY728475
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11620 contig Csv1_Contig11620:1..788. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
BLAST of EY728475 vs. ExPASy Swiss-Prot
Match: EMRK_ECOLI (Multidrug resistance protein K OS=Escherichia coli (strain K12) GN=emrK PE=3 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 8.947e-23
Identity = 61/131 (46.56%), Postives = 82/131 (62.60%), Query Frame = -2
Query:    1 KDTEIRAPFDGVVGQRKVRRQQYVMPGLPLLAVVPVEQAYVIANYKETQLQHMAPGQSVEIAVDSFA-GAQWHGKVESIAPGSGAVFALLPPDNATGNFTKIVQRFPVKIRLEPGESRVLP---GMSVIAT 381
            K T+I++P  G + QR V+  + V PG  L+AVVP  Q +V AN+KETQL  +  GQSV I  D +     +HG+V  I  G+G  F+LLP  NATGN+ KIVQR PV++ L+P E    P   G+S+ AT
Sbjct:  207 KRTDIKSPVTGYIAQRSVQVGETVSPGQSLMAVVPARQMWVNANFKETQLTDVRIGQSVNIISDLYGENVVFHGRVTGINMGTGNAFSLLPAQNATGNWIKIVQRVPVEVSLDPKELMEHPLRIGLSMTAT 337          
BLAST of EY728475 vs. ExPASy Swiss-Prot
Match: EMRA_HAEIN (Multidrug resistance protein A homolog OS=Haemophilus influenzae GN=emrA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.156e-20
Identity = 57/128 (44.53%), Postives = 80/128 (62.50%), Query Frame = -2
Query:    4 TEIRAPFDGVVGQRKVRRQQYVMPGLPLLAVVPVEQAYVIANYKETQLQHMAPGQSVEIAVDSFA-GAQWHGKVESIAPGSGAVFALLPPDNATGNFTKIVQRFPVKIRLEPGESRVLP---GMSVIA 375
            T+IR+P DG V +R V+  Q V  G  L+AVV  EQ ++ AN+KETQL +M  GQ V+I  D +    ++ G +  I  G+G  F+LLP  NATGN+ K+VQR PV+I+L+P +    P   G+S  A
Sbjct:  216 TKIRSPIDGYVARRNVQVGQAVSVGGALMAVVSNEQMWLEANFKETQLTNMRIGQPVKIHFDLYGKNKEFDGVINGIEMGTGNAFSLLPSQNATGNWIKVVQRVPVRIKLDPQQFTETPLRIGLSATA 343          
BLAST of EY728475 vs. ExPASy Swiss-Prot
Match: EMRA_ECOLI (Multidrug resistance protein A OS=Escherichia coli (strain K12) GN=emrA PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 7.838e-19
Identity = 52/129 (40.31%), Postives = 76/129 (58.91%), Query Frame = -2
Query:    1 TEIRAPFDGVVGQRKVRRQQYVMPGLPLLAVVPVEQAYVIANYKETQLQHMAPGQSVEIAVDSFA-GAQWHGKVESIAPGSGAVFALLPPDNATGNFTKIVQRFPVKIRLEPGESRVLP---GMSVIAT 375
            T I +P  G V +R V+    + P  PL+AVVP    +V AN+KETQ+ +M  GQ V I  D +    ++ GKV  +  G+G+ F+LLP  NATGN+ K+VQR PV+I L+  +    P   G+S + +
Sbjct:  216 TRIISPMTGYVSRRAVQPGAQISPTTPLMAVVPATNMWVDANFKETQIANMRIGQPVTITTDIYGDDVKYTGKVVGLDMGTGSAFSLLPAQNATGNWIKVVQRLPVRIELDQKQLEQYPLRIGLSTLVS 344          
BLAST of EY728475 vs. ExPASy Swiss-Prot
Match: YHBJ_BACSU (Putative efflux system component yhbJ OS=Bacillus subtilis GN=yhbJ PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.134e-16
Identity = 39/120 (32.50%), Postives = 69/120 (57.50%), Query Frame = -2
Query:   13 EIRAPFDGVVGQRKVRRQQYVMPGLPLLAVVPVEQAYVIANYKETQLQHMAPGQSVEIAVDSFAGAQWHGKVESIAPGSGAVFALLPPDNATGNFTKIVQRFPVKIRLEPGESRVLPGMS 372
            ++++  DG + + +V+  Q V  G  +   + ++  Y+ AN KET +  +  G SV++ VD      + G VE I   + + F +LP  N++GN+TK+ Q+ PVKI ++    +VLPGM+
Sbjct:   95 DVKSIMDGTIVKNEVKNGQTVQAGTTIAQTIDMDNLYITANIKETDIADIEVGNSVDVVVDGDPDTTFDGTVEEIGYATNSTFDMLPSTNSSGNYTKVTQKVPVKISIKNPSDKVLPGMN 214          
BLAST of EY728475 vs. ExPASy Swiss-Prot
Match: MDTN_SHIFL (Multidrug resistance protein mdtN OS=Shigella flexneri GN=mdtN PE=3 SV=4)

HSP 1 Score: 71.2478 bits (173), Expect = 7.105e-12
Identity = 44/130 (33.85%), Postives = 67/130 (51.54%), Query Frame = -2
Query:    4 TEIRAPFDGVVGQRKVRRQQYVMPGLPLLAVVPVEQAYVIANYKETQLQHMAPGQSVEIAVDSFAGAQWHGKVESIAPG-----SGAVFALLPPDNATGNFTKIVQRFPVKIRLE-PGESRVLPGMSVIA 375
            T +RAPFDG +   K    Q+     P+  ++     YVIAN++ET L+++  G    I + S +G  + GKV+SI  G      G V   LP  + + N+ ++ QRFPVKI ++ P       G S +A
Sbjct:  209 TTVRAPFDGRIISLKTSVGQFASAMRPIFTLIDTRHWYVIANFRETDLKNIRSGTPATIRLMSDSGKTFEGKVDSIGYGVLPDDGGLVLGGLPKVSRSINWVRVAQRFPVKIMVDKPDPEMFRIGASAVA 338          
BLAST of EY728475 vs. ExPASy Swiss-Prot
Match: MDTN_ECOLI (Multidrug resistance protein mdtN OS=Escherichia coli (strain K12) GN=mdtN PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.583e-11
Identity = 44/128 (34.38%), Postives = 66/128 (51.56%), Query Frame = -2
Query:    4 IRAPFDGVVGQRKVRRQQYVMPGLPLLAVVPVEQAYVIANYKETQLQHMAPGQSVEIAVDSFAGAQWHGKVESIAPG-----SGAVFALLPPDNATGNFTKIVQRFPVKIRLE-PGESRVLPGMSVIA 369
            +RAPFDG V   K    Q+     P+  ++     YVIAN++ET L+++  G    I + S +G  + GKV+SI  G      G V   LP  + + N+ ++ QRFPVKI ++ P       G S +A
Sbjct:  211 VRAPFDGRVISLKTSVGQFASAMRPIFTLIDTRHWYVIANFRETDLKNIRSGTPATIRLMSDSGKTFEGKVDSIGYGVLPDDGGLVLGGLPKVSRSINWVRVAQRFPVKIMVDKPDPEMFRIGASAVA 338          
BLAST of EY728475 vs. ExPASy Swiss-Prot
Match: MDTN_ECOL6 (Multidrug resistance protein mdtN OS=Escherichia coli O6 GN=mdtN PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.583e-11
Identity = 44/128 (34.38%), Postives = 66/128 (51.56%), Query Frame = -2
Query:    4 IRAPFDGVVGQRKVRRQQYVMPGLPLLAVVPVEQAYVIANYKETQLQHMAPGQSVEIAVDSFAGAQWHGKVESIAPG-----SGAVFALLPPDNATGNFTKIVQRFPVKIRLE-PGESRVLPGMSVIA 369
            +RAPFDG V   K    Q+     P+  ++     YVIAN++ET L+++  G    I + S +G  + GKV+SI  G      G V   LP  + + N+ ++ QRFPVKI ++ P       G S +A
Sbjct:  211 VRAPFDGRVISLKTSVGQFASAMRPIFTLIDTRHWYVIANFRETDLKNIRSGTPATIRLMSDSGKTFEGKVDSIGYGVLPDDGGLVLGGLPKVSRSINWVRVAQRFPVKIMVDKPDPEMFRIGASAVA 338          
BLAST of EY728475 vs. ExPASy Swiss-Prot
Match: MDTN_ECO57 (Multidrug resistance protein mdtN OS=Escherichia coli O157:H7 GN=mdtN PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.583e-11
Identity = 44/128 (34.38%), Postives = 66/128 (51.56%), Query Frame = -2
Query:    4 IRAPFDGVVGQRKVRRQQYVMPGLPLLAVVPVEQAYVIANYKETQLQHMAPGQSVEIAVDSFAGAQWHGKVESIAPG-----SGAVFALLPPDNATGNFTKIVQRFPVKIRLE-PGESRVLPGMSVIA 369
            +RAPFDG V   K    Q+     P+  ++     YVIAN++ET L+++  G    I + S +G  + GKV+SI  G      G V   LP  + + N+ ++ QRFPVKI ++ P       G S +A
Sbjct:  211 VRAPFDGRVISLKTSVGQFASAMRPIFTLIDTRHWYVIANFRETDLKNIRSGTPATIRLMSDSGKTFEGKVDSIGYGVLPDDGGLVLGGLPKVSRSINWVRVAQRFPVKIMVDKPDPEMFRIGASAVA 338          
The following BLAST results are available for this feature:
BLAST of EY728475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
EMRK_ECOLI8.947e-2346.56Multidrug resistance protein K OS=Escherichia coli... [more]
EMRA_HAEIN4.156e-2044.53Multidrug resistance protein A homolog OS=Haemophi... [more]
EMRA_ECOLI7.838e-1940.31Multidrug resistance protein A OS=Escherichia coli... [more]
YHBJ_BACSU2.134e-1632.50Putative efflux system component yhbJ OS=Bacillus ... [more]
MDTN_SHIFL7.105e-1233.85Multidrug resistance protein mdtN OS=Shigella flex... [more]
MDTN_ECOLI1.583e-1134.38Multidrug resistance protein mdtN OS=Escherichia c... [more]
MDTN_ECOL61.583e-1134.38Multidrug resistance protein mdtN OS=Escherichia c... [more]
MDTN_ECO571.583e-1134.38Multidrug resistance protein mdtN OS=Escherichia c... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-004-C05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728475 ID=EY728475; Name=EY728475; organism=Citrus sinensis; type=EST; length=787bp
CGTGGCGATGACCGACATGCCCGGCAGAACCCGAGATTCGCCAGGCTCCA
GGCGGATTTTCACCGGAAACCGCTGGACGATTTTGGTGAAGTTGCCGGTG
GCGTTGTCCGGCGGCAGCAAGGCGAACACGGCACCGGAGCCAGGGGCGAT
GCTTTCCACTTTGCCGTGCCACTGCGCGCCGGCAAAGCTGTCCACCGCGA
TCTCCACTGACTGCCCCGGCGCCATGTGCTGCAGCTGGGTTTCCTTGTAA
TTGGCAATCACATAGGCCTGCTCCACCGGCACCACCGCCAACAATGGCAG
GCCGGGCATCACGTATTGCTGGCGACGAACCTTGCGCTGGCCCACCACGC
CGTCGAAAGGCGCGCGAATCTCGGTGTCCTTCAACGCATTACCGGCCAGG
GCGAGATTGGCCTGGGCCTCGCCGATGCGTGCCTGATGCTCGACGATTTG
CGCCTGCGCCTGTTGCCGGCGCGCCTGCAACACCTGCAACTGCGCCTGCT
GCCGCGCAACTTGGGCGCGGGCTTGTGCCAGGGCCGCCTGGGCTTTGGCC
TGGCTGGCACTGACGGTTTCGAGGTGCTGGGCGCTGGCCACCTGTTGTGC
GACCAACTCACGATAACGCTGATAATCGAGTCCCGCGCGCCGGGCCTCGG
GCTCGCCACTGCTCAACGCCGCCTTTGCCTGGGGCATGCGTTGCTGCTGC
TCACCCATTTGCGCATCGAGGGTTTGCANCGAAGCCTGTGGCCCCGCGNC
GCCTGCCTAAAGGATCAAACTTAGTACGCGTGATGCA
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