EY688710

Overview
NameEY688710
Unique NameEY688710
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY688710_ssr509 microsatellite EY688710_ssr509:509..520. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9088 contig Csv1_Contig9088:12..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MSH7_ARATH (DNA mismatch repair protein Msh6-2 OS=Arabidopsis thaliana GN=MSH6-2 PE=2 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.053e-79
Identity = 147/192 (76.56%), Postives = 168/192 (87.50%), Query Frame = 2
Query:    2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKG-DQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEEWLKTIVNVSRVDCNSD--DDDAYDTLFCLWHELKNSY 568
            TETASVLQ ATQDSLVILDELGRGTSTFDGYAIAY+VFR LVE++ CR+LFATHYHPLTKEFASHP VT +HMACAFKS S+   +G DQ+LVFLYRLT GACPESYGLQVA+MAG+P +VVE AS AA AMK+SIGE+FKSSE RSEFSSLHE+WLK++V +SRV  N+    +D YDTLFCLWHE+K+SY
Sbjct:  914 TETASVLQNATQDSLVILDELGRGTSTFDGYAIAYSVFRHLVEKVQCRMLFATHYHPLTKEFASHPRVTSKHMACAFKSRSDYQPRGCDQDLVFLYRLTEGACPESYGLQVALMAGIPNQVVETASGAAQAMKRSIGENFKSSELRSEFSSLHEDWLKSLVGISRVAHNNAPIGEDDYDTLFCLWHEIKSSY 1105          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MSH6_ARATH (DNA mismatch repair protein Msh6-1 OS=Arabidopsis thaliana GN=MSH6-1 PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 9.992e-30
Identity = 74/189 (39.15%), Postives = 115/189 (60.85%), Query Frame = 2
Query:    2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEEWLKTIVNVSRVDCNSDDDDAYDTLFCLWHELKNSY 568
            +ETA +L  AT++SLV+LDELGRGT+T DG AIA +V    +E++ CR  F+THYH L+ ++ ++P V+L HMAC           G +E+ FLYRLT GACP+SYG+ VA +AG+P  V++ A   +   +   G++ + ++ +          +K I  +S V  +SD   + D+L C  H + N++
Sbjct: 1144 SETAVMLTSATRNSLVVLDELGRGTATSDGQAIAESVLEHFIEKVQCRGFFSTHYHRLSVDYQTNPKVSLCHMACQIGEG----IGGVEEVTFLYRLTPGACPKSYGVNVARLAGLPDYVLQRAVIKSQEFEALYGKNHRKTDHKL------AAMIKQI--ISSVASDSDYSASKDSL-CELHSMANTF 1319          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MSH6_HUMAN (DNA mismatch repair protein Msh6 OS=Homo sapiens GN=MSH6 PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 6.476e-29
Identity = 62/133 (46.62%), Postives = 90/133 (67.67%), Query Frame = 2
Query:    2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 400
            +ETAS+L  AT  SLV++DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ +  V L HMAC  ++  E+ S+  + + FLY+   GACP+SYG   A +A +P++V++     A   +K
Sbjct: 1195 SETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 1325          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MSH6_MOUSE (DNA mismatch repair protein Msh6 OS=Mus musculus GN=Msh6 PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.461e-28
Identity = 61/128 (47.66%), Postives = 88/128 (68.75%), Query Frame = 2
Query:    2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 385
            +ETAS+L+ AT  SLV++DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++    V L HMAC  ++  E+ S+  + + FLY+   GACP+SYG   A +A +P++V++     A
Sbjct: 1193 SETASILRHATAHSLVLVDELGRGTATFDGTAIASAVVKELAETIKCRTLFSTHYHSLVEDYSKSVCVRLGHMACMVENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKA 1318          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MSH6_SCHPO (DNA mismatch repair protein msh6 OS=Schizosaccharomyces pombe GN=msh6 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.062e-27
Identity = 63/143 (44.06%), Postives = 85/143 (59.44%), Query Frame = 2
Query:    2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSE 430
            +ET  +L +    SLVILDELGRGTST+DG+AIAYAV   LV  I C   F+THY  L  +F  H  V L  MA A            + + FLY+L  G CP+SYG+ VA MAG+P+KV++AA   A  ++++      +S+
Sbjct: 1085 SETKKILDECGPKSLVILDELGRGTSTYDGHAIAYAVLHHLVSNIGCLGFFSTHYQSLCVDFMHHRQVRLMQMAAAVDEKI-------RRVTFLYKLEDGICPKSYGMNVASMAGLPEKVIDAAEEKASELEQASASFINASD 1220          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MSH6_DICDI (DNA mismatch repair protein Msh6 OS=Dictyostelium discoideum GN=msh6 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.753e-26
Identity = 59/132 (44.70%), Postives = 85/132 (64.39%), Query Frame = 2
Query:    5 ETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 400
            ET++VL+ AT+ SLVILDELGRGTSTFDGY+IAY+V   L  ++    +FATHY  L  E      ++  +M C       +  +  ++++FLY+L SG CP SYGL VA MAG+P++++  A   +  M+K
Sbjct: 1089 ETSAVLKYATKRSLVILDELGRGTSTFDGYSIAYSVLNYLATKVQSMCIFATHYQSLAYEPTVRDLISTAYMTC-------HVDEEAKKVIFLYKLASGVCPNSYGLHVASMAGLPREIITKAEEKSTQMEK 1213          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MSH6_DROME (Probable DNA mismatch repair protein Msh6 OS=Drosophila melanogaster GN=Msh6 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.950e-25
Identity = 59/123 (47.97%), Postives = 82/123 (66.67%), Query Frame = 2
Query:    5 ETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 373
            ET+ +L+ AT  SLV+LDELGRGT+T+DG AIA +V   L   + CR LF+THYH L   F +   +TL HMAC  + N +N     + + FLY+ T+GACP+SYG   A +AG+PQ +++ A
Sbjct: 1020 ETSLILKHATCHSLVLLDELGRGTATYDGTAIAASVVNFLAN-LKCRTLFSTHYHNLIDFFHNDKRITLGHMACMVE-NEDNADPTQETVTFLYKYTAGACPKSYGFNAAKLAGMPQGIIKRA 1140          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MSH2_YEAST (DNA mismatch repair protein MSH2 OS=Saccharomyces cerevisiae GN=MSH2 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 6.273e-24
Identity = 57/168 (33.93%), Postives = 96/168 (57.14%), Query Frame = 2
Query:    5 ETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA--LAMKKSIGESFKS--------SEQRSEFSSLHEEWLKTI 478
            ETAS+L+ A+++SL+I+DELGRGTST+DG+ +A+A+   +  +I C  LFATH+H LT+     P+V   H+    + N +     D+++  LY++  G   +S+G+ VA +   P+K+V+ A   A  L   K+  E  K         +E      +L +EW++ +
Sbjct:  750 ETASILKNASKNSLIIVDELGRGTSTYDGFGLAWAIAEHIASKIGCFALFATHFHELTELSEKLPNVKNMHVVAHIEKNLKEQKHDDEDITLLYKVEPGISDQSFGIHVAEVVQFPEKIVKMAKRKANELDDLKTNNEDLKKAKLSLQEVNEGNIRLKALLKEWIRKV 917          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MUTS_HALHL (DNA mismatch repair protein mutS OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=mutS PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.397e-23
Identity = 60/143 (41.96%), Postives = 86/143 (60.14%), Query Frame = 2
Query:    2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSE 430
            TETA++L  AT +SLV++DE+GRGTSTFDG A+A+A   +L  RI    LFATHY  +T     HP V   H+  A         +  + +VFL+ +  G   +SYGLQVA +AGVPQ+V++AA     +++   G    S++
Sbjct:  682 TETANILHNATAESLVLMDEIGRGTSTFDGLALAWATAERLATRIRAFTLFATHYFEMTALEQIHPGVVNVHLEAA---------EHGERIVFLHAVRDGPANQSYGLQVAALAGVPQEVLKAAREKLRSLESGDGGDTGSAQ 815          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MUTS_BURP8 (DNA mismatch repair protein mutS OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=mutS PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.384e-23
Identity = 60/137 (43.80%), Postives = 81/137 (59.12%), Query Frame = 2
Query:    2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA-SHAALAMKKSIG 409
            TE A++L  AT  SLV++DE+GRGTSTFDG A+A+A+ R L+    C  LFATHY  LT+  A  PH    H++     +          +VFL+ +  G   +SYGLQVA +AGVP  V+ AA  H A   ++S G
Sbjct:  695 TEAAAILNDATPQSLVLMDEIGRGTSTFDGLALAWAIARHLLAHNGCHTLFATHYFELTQLPAEFPHAANVHLSAVEHGHG---------IVFLHAVNEGPANQSYGLQVAQLAGVPNAVIRAARKHLAYLEQQSAG 822          
The following BLAST results are available for this feature:
BLAST of EY688710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MSH7_ARATH1.053e-7976.56DNA mismatch repair protein Msh6-2 OS=Arabidopsis ... [more]
MSH6_ARATH9.992e-3039.15DNA mismatch repair protein Msh6-1 OS=Arabidopsis ... [more]
MSH6_HUMAN6.476e-2946.62DNA mismatch repair protein Msh6 OS=Homo sapiens G... [more]
MSH6_MOUSE2.461e-2847.66DNA mismatch repair protein Msh6 OS=Mus musculus G... [more]
MSH6_SCHPO6.062e-2744.06DNA mismatch repair protein msh6 OS=Schizosaccharo... [more]
MSH6_DICDI8.753e-2644.70DNA mismatch repair protein Msh6 OS=Dictyostelium ... [more]
MSH6_DROME1.950e-2547.97Probable DNA mismatch repair protein Msh6 OS=Droso... [more]
MSH2_YEAST6.273e-2433.93DNA mismatch repair protein MSH2 OS=Saccharomyces ... [more]
MUTS_HALHL1.397e-2341.96DNA mismatch repair protein mutS OS=Halorhodospira... [more]
MUTS_BURP82.384e-2343.80DNA mismatch repair protein mutS OS=Burkholderia p... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-091-F07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688710 ID=EY688710; Name=EY688710; organism=Citrus sinensis; type=EST; length=679bp
CACAGAGACGGCATCAGTTCTTCAGAAAGCCACTCAAGATTCTCTGGTAA
TTCTTGATGAACTGGGTCGAGGAACAAGCACTTTTGATGGATATGCCATT
GCCTACGCTGTATTCCGCCAACTTGTTGAAAGGATCAATTGTCGGTTGCT
ATTTGCAACACATTACCATCCACTCACAAAAGAATTTGCTTCTCATCCGC
ATGTTACTCTACAACATATGGCTTGTGCTTTCAAGTCAAACTCTGAAAAC
TATTCGAAAGGTGATCAAGAGCTGGTTTTTCTCTACCGCCTTACTTCCGG
AGCATGCCCAGAGAGCTATGGGTTGCAAGTGGCTGTAATGGCTGGGGTTC
CACAAAAGGTGGTTGAGGCAGCATCACATGCTGCTCTAGCAATGAAAAAA
TCAATAGGAGAAAGTTTCAAGTCGAGTGAACAGAGATCAGAGTTCTCAAG
TCTCCATGAAGAGTGGTTGAAGACCATTGTAAATGTCTCAAGGGTTGATT
GTAATTCCGATGATGATGATGCTTATGACACATTGTTTTGTTTGTGGCAT
GAGCTAAAGAATTCATATCAGTTGCACAACTAAAAGAGAAGGTGGCAAAG
ATAATGATTGCTACATGACTTTGCCTAATTGCCTTAATCAATTTTTCTTT
GTGTAAAAAAAAAAAAAAAAAAAAAAAAA
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