EY688687

Overview
NameEY688687
Unique NameEY688687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1216 contig Csv1_Contig1216:285..1129. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY688687 vs. ExPASy Swiss-Prot
Match: CIP8_ARATH (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.925e-24
Identity = 58/123 (47.15%), Postives = 74/123 (60.16%), Query Frame = 3
Query:  105 RLPANLGDYFI-GPGLEQLIQQLAENDPN----RYGTPPASKSAIEALPSIKINEAMMSSDSSQ---CAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPTDDPDYEQRR 449
            R   N  DY     G E L+Q LAE D      R G PPA+KSAIEAL + +++    SS+      CAVCKD   + E  +++PC H YH DCI+PWL   NSCPVCR++L TDD +YE+ R
Sbjct:  194 RYAGNPADYIDDAAGYEALLQNLAEGDGGGGGGRRGAPPAAKSAIEALETFEVS----SSEGEMVMVCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCRFQLETDDAEYEEER 312          
BLAST of EY688687 vs. ExPASy Swiss-Prot
Match: RN126_MOUSE (RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.085e-20
Identity = 58/139 (41.73%), Postives = 78/139 (56.12%), Query Frame = 3
Query:   12 QNLPVNGASIQFVVENNSNVDPAAG---GAGAAFRLPANLGDYFIGP-GLEQLIQQLAENDPNRYGTPPASKSAIEALPSIKINEAMMSSDSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYEL 416
            + +P     IQ +V  N  + PAA    G G    L +N  DY  G  GL+ +I QL     N  G PPA K  I+ALP++ + E  + S   +C VCK+ + L E  RQ+PC H++H  CI+PWLE H+SCPVCR  L
Sbjct:  141 EGVPTLEGIIQQLV--NGIISPAAVPSLGLGPWGVLHSNPMDYAWGANGLDTIITQLLNQFENT-GPPPADKEKIQALPTVPVTEEHVGS-GLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 275          
BLAST of EY688687 vs. ExPASy Swiss-Prot
Match: RN126_HUMAN (RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.645e-20
Identity = 49/104 (47.12%), Postives = 64/104 (61.54%), Query Frame = 3
Query:  108 LPANLGDYFIGP-GLEQLIQQLAENDPNRYGTPPASKSAIEALPSIKINEAMMSSDSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYEL 416
            L +N  DY  G  GL+ +I QL     N  G PPA K  I+ALP++ + E  + S   +C VCKD + L E  RQ+PC H++H  CI+PWLE H+SCPVCR  L
Sbjct:  172 LHSNPMDYAWGANGLDAIITQLLNQFENT-GPPPADKEKIQALPTVPVTEEHVGS-GLECPVCKDDYALGERVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 273          
BLAST of EY688687 vs. ExPASy Swiss-Prot
Match: RN126_BOVIN (RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.645e-20
Identity = 51/111 (45.95%), Postives = 66/111 (59.46%), Query Frame = 3
Query:   87 GAGAAFRLPANLGDYFIGP-GLEQLIQQLAENDPNRYGTPPASKSAIEALPSIKINEAMMSSDSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYEL 416
            G G    L +N  DY  G  GL+ +I QL     N  G PPA K  I+ALP++ + E  + S   +C VCKD + L E  RQ+PC H++H  CI+PWLE H+SCPVCR  L
Sbjct:  168 GLGPWGVLHSNPMDYAWGANGLDAIITQLLNQFENT-GPPPADKEKIQALPTVPVTEEHVGS-GLECPVCKDDYGLGEHVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 276          
BLAST of EY688687 vs. ExPASy Swiss-Prot
Match: RN115_HUMAN (RING finger protein 115 OS=Homo sapiens GN=RNF115 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 1.035e-19
Identity = 46/108 (42.59%), Postives = 66/108 (61.11%), Query Frame = 3
Query:  108 LPANLGDYFIGP-GLEQLIQQLAENDPNRYGTPPASKSAIEALPSIKINEAMMSSDSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPTDD 428
            L +N GDY  G  GL+ ++ QL     N  G PPA K  I +LP++ + +  +     +C VCK+ + + EE RQ+PC H +H  CI+PWLELH++CPVCR  L  +D
Sbjct:  171 LHSNPGDYAWGQTGLDAIVTQLLGQLENT-GPPPADKEKITSLPTVTVTQEQVDM-GLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGED 276          
BLAST of EY688687 vs. ExPASy Swiss-Prot
Match: RN181_XENLA (E3 ubiquitin-protein ligase rnf181 OS=Xenopus laevis GN=rnf181 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.352e-19
Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = 3
Query:  201 PPASKSAIEALPSIKINEAMMSSDSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPTDDPDYEQ 443
            PPASK  +E+LP + +      + + +C VC   FE  E  RQ+PC+H++H  CI+PWL   NSCP+CR+ELPTD PDYE+
Sbjct:   53 PPASKKVVESLPKVTVTPEQADA-ALKCPVCLLEFEEGETVRQLPCEHLFHSACILPWLGKTNSCPLCRHELPTDSPDYEE 132          
BLAST of EY688687 vs. ExPASy Swiss-Prot
Match: RN126_XENTR (RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.352e-19
Identity = 50/111 (45.05%), Postives = 67/111 (60.36%), Query Frame = 3
Query:   87 GAGAAFRLPANLGDYFIGP-GLEQLIQQLAENDPNRYGTPPASKSAIEALPSIKINEAMMSSDSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYEL 416
            G G    L +N  DY  G  GL+ +I QL     N  G PPA    I+ALP+I+I E  + S   +C VCK+ + + E  RQ+PC H++H DCI+PWLE H++CPVCR  L
Sbjct:  163 GVGPWGVLHSNPMDYAWGANGLDTIITQLLNQFENT-GPPPADTEKIQALPTIQITEEHVGS-GLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 271          
BLAST of EY688687 vs. ExPASy Swiss-Prot
Match: RN115_MOUSE (RING finger protein 115 OS=Mus musculus GN=Rnf115 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.352e-19
Identity = 45/108 (41.67%), Postives = 68/108 (62.96%), Query Frame = 3
Query:  108 LPANLGDYFIGP-GLEQLIQQLAENDPNRYGTPPASKSAIEALPSIKINEAMMSSDSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPTDD 428
            L +N GDY  G  GL+ ++ QL     N  G PPA K  I +LP++ + +  +++   +C VCK+ + + E+ RQ+PC H +H  CI+PWLELH++CPVCR  L  +D
Sbjct:  172 LHSNPGDYAWGQTGLDAIVTQLLGQLENT-GPPPADKEKITSLPTVTVTQEQVNT-GLECPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGED 277          
BLAST of EY688687 vs. ExPASy Swiss-Prot
Match: R126A_XENLA (RING finger protein 126-A OS=Xenopus laevis GN=rnf126-A PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.011e-19
Identity = 50/111 (45.05%), Postives = 67/111 (60.36%), Query Frame = 3
Query:   87 GAGAAFRLPANLGDYFIGP-GLEQLIQQLAENDPNRYGTPPASKSAIEALPSIKINEAMMSSDSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYEL 416
            G G    L +N  DY  G  GL+ +I QL     N  G PPA    I+ALP+I+I E  + S   +C VCK+ + + E  RQ+PC H++H DCI+PWLE H++CPVCR  L
Sbjct:  164 GVGPWGVLHSNPMDYAWGANGLDTIITQLLNQFENT-GPPPADNEKIQALPTIQITEEHVGS-GLECPVCKEDYTVGECVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272          
BLAST of EY688687 vs. ExPASy Swiss-Prot
Match: RN181_XENTR (E3 ubiquitin-protein ligase rnf181 OS=Xenopus tropicalis GN=rnf181 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.136e-19
Identity = 38/81 (46.91%), Postives = 55/81 (67.90%), Query Frame = 3
Query:  201 PPASKSAIEALPSIKINEAMMSSDSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPTDDPDYEQ 443
            PPA+K  +E+LP + +      + + +C VC   FE  E  RQ+PC+H++H  CI+PWL   NSCP+CR+ELPTD P+YE+
Sbjct:   53 PPAAKKVVESLPKVTVTPEQADA-ALKCPVCLLEFEEGETVRQLPCEHLFHSSCILPWLGKTNSCPLCRHELPTDSPEYEE 132          
The following BLAST results are available for this feature:
BLAST of EY688687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
CIP8_ARATH6.925e-2447.15E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis th... [more]
RN126_MOUSE2.085e-2041.73RING finger protein 126 OS=Mus musculus GN=Rnf126 ... [more]
RN126_HUMAN4.645e-2047.12RING finger protein 126 OS=Homo sapiens GN=RNF126 ... [more]
RN126_BOVIN4.645e-2045.95RING finger protein 126 OS=Bos taurus GN=RNF126 PE... [more]
RN115_HUMAN1.035e-1942.59RING finger protein 115 OS=Homo sapiens GN=RNF115 ... [more]
RN181_XENLA1.352e-1949.38E3 ubiquitin-protein ligase rnf181 OS=Xenopus laev... [more]
RN126_XENTR1.352e-1945.05RING finger protein 126 OS=Xenopus tropicalis GN=r... [more]
RN115_MOUSE1.352e-1941.67RING finger protein 115 OS=Mus musculus GN=Rnf115 ... [more]
R126A_XENLA3.011e-1945.05RING finger protein 126-A OS=Xenopus laevis GN=rnf... [more]
RN181_XENTR5.136e-1946.91E3 ubiquitin-protein ligase rnf181 OS=Xenopus trop... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-091-C10-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688687 ID=EY688687; Name=EY688687; organism=Citrus sinensis; type=EST; length=845bp
AAAACTATCTTCAAAACCTACCAGTGAACGGCGCCAGCATCCAATTCGTC
GTCGAGAACAACTCCAACGTCGACCCAGCGGCCGGTGGCGCTGGGGCTGC
GTTTCGTCTCCCGGCGAATCTTGGAGACTACTTCATCGGTCCGGGCCTCG
AGCAGTTGATCCAACAGCTGGCTGAGAATGATCCAAACCGGTACGGGACA
CCGCCGGCCTCGAAATCTGCCATAGAGGCCCTCCCGAGTATCAAGATCAA
CGAGGCAATGATGAGTTCGGATTCTTCTCAGTGTGCTGTGTGTAAGGATA
GCTTTGAATTGAATGAAGAAGCTAGACAGATGCCTTGTAAGCATATATAT
CATCCGGATTGTATTATGCCTTGGCTTGAATTGCATAATTCCTGTCCTGT
TTGTCGTTATGAATTGCCAACTGATGATCCTGATTATGAACAAAGGCGGA
ATGGGAATGGGAATGGGAATAATAATAGTAATAATAACAATAGTATGAAT
CAGAGCCCAGACAAGAAGATCTTGATTAAGAAGGCATTGGGATGAAAGGC
GATTCGTATACCGCAACTGTGGGTGACATAAAAGAGGTGTTATTATTGAT
TAGTTTACAAGTGCAGTTTTACTATTCGGATAATAATCAATAGGTAAATG
TGCATTTTGATGTTAGTATTAAAAATTTTTTACAGCTCAACATGTCCTGA
CAAGTTTGATGTGCATCATTTGCTTGCATATTTTGAAAAAAAGGAAAAAA
AAAATTATCACCCTGGGACCCNTANAAAAAAAAAACCAACAAAAAATACA
AAAAAAAAACTACAAAACATGACTAAAAACAAACATAAAATCTAA
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