EY688673

Overview
NameEY688673
Unique NameEY688673
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length600
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7056 contig Csv1_Contig7056:1151..1756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY688673 vs. ExPASy Swiss-Prot
Match: PGLR_VITVI (Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 8.575e-69
Identity = 118/151 (78.15%), Postives = 130/151 (86.09%), Query Frame = 2 
Query:    8 KTAVRIGGYVKDIYVRGMTMHTMKWAFWMTGNYGSHADNHYDPKALPVIQGINYRDIVADNVSMAARLEGISGDPFTGICIANATIGMAAKHKKVPWTCADIGGMTSGVTPPPCELLPDQGPEKIRACDFPTESLPIDMVEMKKCTYRINY 460
            KT +  GGYVKDIYVRGMTM TMKWAFWMTGNYGSHADNHYDPKA PVIQGINYRD+VA+NVSMAARLEGI  DPFTGICI+N TI +AAK KKVPWTC D+ G++SGVTP PC  LPDQGPEK   C+FP ESLPID VE++KC+Y INY
Sbjct:  339 KTGIGRGGYVKDIYVRGMTMKTMKWAFWMTGNYGSHADNHYDPKAFPVIQGINYRDMVAENVSMAARLEGIPSDPFTGICISNVTIHLAAKAKKVPWTCTDVEGISSGVTPTPCSTLPDQGPEKTSLCNFPAESLPIDTVELQKCSYGINY 489
The following BLAST results are available for this feature:
BLAST of EY688673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PGLR_VITVI8.575e-6978.15Probable polygalacturonase OS=Vitis vinifera GN=GS... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-091-B02-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688673 ID=EY688673; Name=EY688673; organism=Citrus sinensis; type=EST; length=600bp
TTAGAATAAAACTGCCGTACGCATAGGAGGGTATGTTAAAGACATTTACG
TAAGAGGAATGACCATGCACACAATGAAATGGGCCTTTTGGATGACTGGC
AATTATGGATCGCATGCCGATAATCACTATGATCCAAAGGCTCTGCCCGT
GATTCAAGGAATTAATTATAGGGACATTGTGGCGGATAATGTGTCCATGG
CTGCTAGATTAGAGGGAATTTCCGGTGACCCATTTACAGGTATTTGCATT
GCTAATGCGACAATTGGAATGGCGGCCAAGCATAAGAAAGTACCGTGGAC
TTGTGCTGATATTGGAGGGATGACCAGTGGCGTGACTCCTCCACCCTGTG
AATTGTTACCTGATCAAGGACCTGAGAAAATAAGAGCCTGTGACTTCCCG
ACTGAGAGTCTACCAATTGATATGGTGGAGATGAAAAAGTGTACTTACAG
AATTAATTATTTGTGAATTTCCTTTGCTAGTATAAGCAGGACAACAGCTT
CTGTTTCTCTACGCTATGCTACAACAGTTTTAATACTTTAGTGCCTGTTT
AAGGCATAAGTGTTTATTTAATCTTATAATTTTTTAAAAAAAAAAAAAAA
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