EY688668

Overview
NameEY688668
Unique NameEY688668
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12503 contig Csv1_Contig12503:613..1481. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY688668 vs. ExPASy Swiss-Prot
Match: IM30_PEA (Membrane-associated 30 kDa protein, chloroplastic OS=Pisum sativum GN=IM30 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 9.396e-56
Identity = 117/157 (74.52%), Postives = 133/157 (84.71%), Query Frame = 3
Query:   18 ARVDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETSSVDDDLANXXXXXXXXXXXXXXPPGRA---AASSTNTAFPFRDAEIEKELNELRQRAKD 479
            A++DQQK+VV+NLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKV+TMESQA++L QLTTDDLEGKFA+LETSSVDDDLAN              PPGR+   + +ST T  PFRDA+IE EL +LR+R+K+
Sbjct:  166 AQLDQQKSVVDNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVMTMESQAEALGQLTTDDLEGKFAMLETSSVDDDLANLKKELAGSSKKGELPPGRSSTTSTTSTKTGNPFRDADIEIELEQLRKRSKE 322          
BLAST of EY688668 vs. ExPASy Swiss-Prot
Match: IM30_ORYSJ (Probable membrane-associated 30 kDa protein, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0895100 PE=1 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.959e-53
Identity = 110/155 (70.97%), Postives = 124/155 (80.00%), Query Frame = 3
Query:   18 ARVDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETSSVDDDLANXXXXXXXXXXXXXXPPGRAAASSTNTAFPFRDAEIEKELNELRQRAKDF 482
            A++DQQK VV NLVSNTR+LESKI EA+ KKDTLKARAQSAKT+TKVSEMLGNVNTS ALSAFEKMEEKV+ MESQA++L QL TDDLEGKFALLETSSVDDDLA               PPGR A S++  A PFRD EIE ELNELR++A ++
Sbjct:  163 AQLDQQKGVVENLVSNTRVLESKIAEAKQKKDTLKARAQSAKTSTKVSEMLGNVNTSGALSAFEKMEEKVMAMESQAEALGQLATDDLEGKFALLETSSVDDDLAQMKKEISGSSSKGELPPGRTAVSNSGAARPFRDIEIENELNELRKKANEY 317          
BLAST of EY688668 vs. ExPASy Swiss-Prot
Match: IM30_ARATH (Probable membrane-associated 30 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At1g65260 PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.241e-49
Identity = 101/154 (65.58%), Postives = 125/154 (81.17%), Query Frame = 3
Query:   21 RVDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETSSVDDDLANXXXXXXXXXXXXXXPPGRAAASSTNTAFPFRDAEIEKELNELRQRAKDF 482
            ++DQQK VV+NLVSNTRLLESKIQEA++KKDTL ARA++AKTATKV EM+G VNTS ALSAFEKMEEKV+ MES+AD+L Q+ TD+LEGKF +LETSSVDDDLA+              PPGR+  ++ +T +PF+D+EIE ELNELR++A DF
Sbjct:  178 QLDQQKGVVDNLVSNTRLLESKIQEAKAKKDTLLARARTAKTATKVQEMIGTVNTSGALSAFEKMEEKVMAMESEADALTQIGTDELEGKFQMLETSSVDDDLADLKKELSGSSKKGELPPGRSTVAA-STRYPFKDSEIENELNELRRKANDF 330          
BLAST of EY688668 vs. ExPASy Swiss-Prot
Match: Y617_SYNY3 (Uncharacterized protein sll0617 OS=Synechocystis sp. (strain PCC 6803) GN=sll0617 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.672e-18
Identity = 62/159 (38.99%), Postives = 91/159 (57.23%), Query Frame = 3
Query:   30 QQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETSS-VDDDLANXXXXXXXXXXXXXXPPGRAAASSTNTAFPF-----------RDAEIEKELNELRQR 470
            QQ+ +  NL  N   LE+KI EA++KK+ L+ARA++AK   ++ + LG + TSSA SAFE+ME KVL ME+ + +  +L    +E +FA LE SS V+D+LA                PG +AA+    A P             DA I++EL++LR+R
Sbjct:  110 QQRTMSENLRRNLAALEAKISEAKTKKNMLQARAKAAKANAELQQTLGGLGTSSATSAFERMENKVLDMEATSQAAGELAGFGIENQFAQLEASSGVEDELAALKASMAGGAL-----PGTSAATPQLEAAPVDSSVPANNASQDDAVIDQELDDLRRR 263          
The following BLAST results are available for this feature:
BLAST of EY688668 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
IM30_PEA9.396e-5674.52Membrane-associated 30 kDa protein, chloroplastic ... [more]
IM30_ORYSJ1.959e-5370.97Probable membrane-associated 30 kDa protein, chlor... [more]
IM30_ARATH2.241e-4965.58Probable membrane-associated 30 kDa protein, chlor... [more]
Y617_SYNY32.672e-1838.99Uncharacterized protein sll0617 OS=Synechocystis s... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-091-A07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688668 ID=EY688668; Name=EY688668; organism=Citrus sinensis; type=EST; length=869bp
CGGACGCGTGGGCGGACGCGCGTGTTGATCAACAAAAGAATGTTGTTAAT
AACCTTGTTTCTAATACTCGGCTTTTGGAGAGCAAGATACAGGAGGCAAG
ATCAAAGAAAGATACTCTGAAAGCAAGGGCTCAGTCTGCAAAGACTGCAA
CCAAAGTGAGCGAGATGTTGGGGAATGTCAACACTAGCAGTGCTCTTTCA
GCTTTTGAAAAAATGGAAGAGAAAGTGTTGACAATGGAGTCCCAAGCAGA
TTCTCTTAACCAGTTAACTACCGATGATCTTGAAGGAAAGTTTGCACTAC
TTGAGACCTCATCCGTTGACGATGATCTTGCAAACCTTAAAAAGGAACTA
TCTGGCAGCTCAAAGAAAGGAGAGCTTCCACCTGGAAGGGCTGCTGCTAG
CAGCACAAACACTGCATTTCCATTTCGAGATGCGGAAATTGAGAAGGAAT
TGAACGAGTTGAGGCAGAGAGCAAAAGATTTCTGAAGTTCTCACTACACA
TTGCAAATATGGTTACAAATTCAGAATTCAAGCTCAAAATTGAACGAATT
TTTGTTTAGCCTACCTATTGACCTTGTAAAGCTACGAGGCCAAACGGATA
AAACGTTGTATAGCTGGAGGCCAAACTCAAATAATTAGTGATTTGTTTAT
CCCTGTTTTTCATATGGATCTTATTTTGCCACCCATTTTCTTCTAATTGT
AATGGACATGACTGTGCAGTAGCTACCCTTGTGCTTGGACTTAACATCCT
GGTTATTTTTTATTTTGGATGATCATTTTTGTTTCTTAAATTGTTCACTT
TTAAAAAAAAAAAAAAAACAAAAAAAAATATTCCTTTGGTAAAAAAAAAA
AAAAAAGGGGCGGCCGCTT
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