EY688659

Overview
NameEY688659
Unique NameEY688659
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY688659_ssr309 microsatellite EY688659_ssr309:309..320. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY688659 vs. ExPASy Swiss-Prot
Match: PSBQ2_ARATH (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=PSBQ2 PE=1 SV=2)

HSP 1 Score: 236.498 bits (602), Expect = 1.471e-61
Identity = 133/226 (58.85%), Postives = 164/226 (72.57%), Query Frame = 1
Query:   58 GLRGSSHSQAVLEGSSQLSGPNRLNAPSNSRVAVA--RSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADATPIKVXXXXXXXXXXXXTLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQNHPAILTMRAKNKSTPEPKKYYAETVSTRNEVSSQV 729
            GLRG+S  QAVLEGS Q++G NRLN    SRV+V   R+G  +RAQQ  + PE+SRR++IGLVAAG+A GSFV+AV A+A PIKV            T NSD+ RD  L LK+RF+IQPLSP           K+I+NVK  IDKKAWPYVQNDLRLRASYLRYDLNT+ISAKPK+EKQSLK+LT KLFQ     L   A++KS+P+ +KYY+ETVS+ N V +++
Sbjct:   10 GLRGAS--QAVLEGSLQINGSNRLNI---SRVSVGSQRTGLVIRAQQNVSVPESSRRSVIGLVAAGLAGGSFVKAVFAEAIPIKVGGPPLPSGGLPGTDNSDQARDFSLALKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVISAKPKEEKQSLKDLTAKLFQTIDN-LDYAARSKSSPDAEKYYSETVSSLNNVLAKL 229          
BLAST of EY688659 vs. ExPASy Swiss-Prot
Match: PSBQ_SPIOL (Oxygen-evolving enhancer protein 3, chloroplastic OS=Spinacia oleracea GN=PSBQ PE=1 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 3.066e-59
Identity = 130/225 (57.78%), Postives = 157/225 (69.78%), Query Frame = 1
Query:   58 GLRGSSHSQAVLEGSSQLSGPNRLNAPSNSRVAVARSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADATPIKVXXXXXXXXXXXXTLNSDEPRDLDLP-LKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQNHPAILTMRAKNKSTPEPKKYYAETVSTRNEVSSQV 729
            GLRG+S  QAVLEGS Q+SG NRL+ P+ SRVAV + G  +RAQQ S E ETSRRAM+G VAAG+ASGSFV+AVLA+A PI V            T NSD+ RD  LP  K+RF++QPL P            +ILNVK+ ID+KAWP +QNDLRLRASYLRYDL T+ISAKPKDEK+SL+ LT KLF +    L   AK KS  E +KYY +TVS  NEV +++
Sbjct:   10 GLRGAS--QAVLEGSLQISGSNRLSGPTTSRVAVPKMGLNIRAQQVSAEAETSRRAMLGFVAAGLASGSFVKAVLAEARPIVVGPPPPLSGGLPGTENSDQARDGTLPYTKDRFYLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDN-LDHAAKIKSPTEAEKYYGQTVSNINEVLAKL 231          
BLAST of EY688659 vs. ExPASy Swiss-Prot
Match: PSBQ1_ARATH (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 213.386 bits (542), Expect = 1.333e-54
Identity = 131/226 (57.96%), Postives = 156/226 (69.03%), Query Frame = 1
Query:   58 GLRGSSHSQAVLEGSSQLSGPNRLNAPSNSRVAVA-RSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADATPIKVXXXXXXXXXXXX-TLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQNHPAILTMRAKNKSTPEPKKYYAETVSTRNEVSSQV 729
            GL G+S   AVLEGS +++G +RLN   + RVAVA RS   VRAQQ+    ETSRR++IGLVAAG+A GSFVQAVLADA  IKV             T NSD+ RD  L LK+RF++QPL P           KDI+NVK LID+KAWPYVQNDLR +ASYLRYDLNTIIS+KPKDEK+SLK+LT KLF      L   AK KS  + +KYYAETVS  NEV +++
Sbjct:    6 GLHGAS--PAVLEGSLKINGSSRLNG--SGRVAVAQRSRLVVRAQQSE---ETSRRSVIGLVAAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPAGTDNSDQARDFALALKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLKDLTTKLFDTIDN-LDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223          
BLAST of EY688659 vs. ExPASy Swiss-Prot
Match: PSBQ_ONOVI (Oxygen-evolving enhancer protein 3, chloroplastic OS=Onobrychis viciifolia GN=PSBQ PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 8.370e-49
Identity = 120/228 (52.63%), Postives = 150/228 (65.79%), Query Frame = 1
Query:   79 SQAVLEGSSQL-SGPNRLNAPSNSRVAVARSGFTVRAQQ---------ASNEPETSRRAMIGLVAAGVASGSFVQAVLADATPIKVXXXXXXXXXXXXTLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLK-NLTGKLFQNHPAILTMRAKNKSTPEPKKYYAETVSTRNEVSSQV 729
            +  +LEGS QL SG NR  + S+SR       F VRAQQ         ++ +P+++RRAM+GLVA G+AS SFVQAVLA+A PIKV            TLNSDE RDL LPLKERF+IQPLSP           K+I+ VK+ ID+K      NDLRLRASYLRYDLNT+IS+KPK++KQSLK +  GKLFQ+    L   AK KS P+ +KYYA+ VST N+V S++
Sbjct:    6 ASGLLEGSLQLMSGSNR--SSSSSRTRGPAGVFIVRAQQQEQQQGMSSSAADPQSNRRAMLGLVATGLASASFVQAVLAEAKPIKVGGPPPPSGGLGGTLNSDEARDLKLPLKERFYIQPLSPTEAAQRQRESAKEIVAVKKFIDQKLGHMFINDLRLRASYLRYDLNTVISSKPKEQKQSLKESSAGKLFQDIDN-LDYAAKLKSAPQAEKYYADAVSTLNDVLSKI 230          
BLAST of EY688659 vs. ExPASy Swiss-Prot
Match: PSBQ_ORYSJ (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0544800 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.806e-43
Identity = 102/213 (47.89%), Postives = 135/213 (63.38%), Query Frame = 1
Query:   94 EGSSQLSGPNRLNAPSNSRVAVARSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADAT-PIKVXXXXXXXXXXXXTLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQNHPAILTMRAKNKSTPEPKKYYAETVSTRNEVSSQV 729
            +G    +GP R  A   SR+AV      VRA  A+ + +T RRA++GLVA G+A G+  QA LA+A  PIK+            TLNSD+ RD DLPL+ERF++QPL P           +DI+N+K LI+KK WP+V++DLRLRASYLRYDL T+I++KPKDEK+ LK+LTGKLF      L   AK KS  E +KYY  T S   +V +++
Sbjct:   13 QGVQLPAGPRR--AGGRSRLAV------VRADAAAADVQTGRRAVLGLVATGIAGGALAQAALAEAAKPIKLGPPPPPSGGLPGTLNSDQARDTDLPLRERFYLQPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVINSKPKDEKKGLKDLTGKLFATIDG-LDHAAKIKSPEEAEKYYTLTKSALGDVLAKL 216          
BLAST of EY688659 vs. ExPASy Swiss-Prot
Match: PSBQ_ORYSI (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_025465 PE=1 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 1.806e-43
Identity = 102/213 (47.89%), Postives = 135/213 (63.38%), Query Frame = 1
Query:   94 EGSSQLSGPNRLNAPSNSRVAVARSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADAT-PIKVXXXXXXXXXXXXTLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQNHPAILTMRAKNKSTPEPKKYYAETVSTRNEVSSQV 729
            +G    +GP R  A   SR+AV      VRA  A+ + +T RRA++GLVA G+A G+  QA LA+A  PIK+            TLNSD+ RD DLPL+ERF++QPL P           +DI+N+K LI+KK WP+V++DLRLRASYLRYDL T+I++KPKDEK+ LK+LTGKLF      L   AK KS  E +KYY  T S   +V +++
Sbjct:   13 QGVQLPAGPRR--AGGRSRLAV------VRADAAAADVQTGRRAVLGLVATGIAGGALAQAALAEAAKPIKLGPPPPPSGGLPGTLNSDQARDTDLPLRERFYLQPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVINSKPKDEKKGLKDLTGKLFATIDG-LDHAAKIKSPEEAEKYYTLTKSALGDVLAKL 216          
BLAST of EY688659 vs. ExPASy Swiss-Prot
Match: PSBQ1_MAIZE (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays GN=PSBQ1 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 3.081e-43
Identity = 106/221 (47.96%), Postives = 135/221 (61.09%), Query Frame = 1
Query:   73 SHSQAVLEGSSQLSGPNRLNAPSNSRVAVARSGFTVRAQQASNE-PETSRRAMIGLVAAGVASGSFVQAVLADATP-IKVXXXXXXXXXXXXTLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQNHPAILTMRAKNKSTPEPKKYYAETVSTRNEVSSQV 729
            + + A + G SQ   P+R  A S +R AV      VRA    +   +  RRA+IGLVA G+  G+  QA  A+    IK+            TLNSD+ RD DLPLKERF++QPL P           +DI+N+K LIDKKAWPYVQNDLRLRASYLRYDL T+I++KPK+EK+SLK LTGKLF      L   AK KSTPE +KY+A T     +V +++
Sbjct:    2 AQAMASMTGLSQGVLPSR-RADSRTRTAVV----IVRASAEGDAVAQAGRRAVIGLVATGIVGGALSQAARAETVKTIKIGAPPPPSGGLPGTLNSDQARDFDLPLKERFYLQPLPPAEAAARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIASKPKEEKKSLKELTGKLFSTIDD-LDHAAKIKSTPEAEKYFAATKDALGDVLAKL 216          
BLAST of EY688659 vs. ExPASy Swiss-Prot
Match: PSBQ2_MAIZE (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays GN=PSBQ2 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.481e-37
Identity = 95/220 (43.18%), Postives = 127/220 (57.73%), Query Frame = 1
Query:   73 SHSQAVLEGSSQLSGPNRLNAPSNSRVAVARSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADATP-IKVXXXXXXXXXXXXTLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQNHPAILTMRAKNKSTPEPKKYYAETVSTRNEVSSQV 729
            + + A + G SQ   P   ++ + + V V R+  +    + +  P   R      + A  +S    QAV A+    IK+            TLNSD+ RD DLPLKERF++QPL P           +DI+N+K LIDKKAWPYVQNDLRLRASYLRYDL T+I++KPK+EK+SLK LTGKLF      L   AK KSTPE +KY+A T     +V +++
Sbjct:    2 AQAMASMTGLSQGVCPAAADSRTRTAVVVVRA--SAEGDRCAGGPRCDR------LVATASSPPLSQAVHAETVKTIKIGAPPPPSGGLPGTLNSDQTRDFDLPLKERFYLQPLPPAEAVARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIASKPKEEKKSLKELTGKLFSTIDD-LDHAAKMKSTPEAEKYFAATKDALGDVLAKL 212          
The following BLAST results are available for this feature:
BLAST of EY688659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PSBQ2_ARATH1.471e-6158.85Oxygen-evolving enhancer protein 3-2, chloroplasti... [more]
PSBQ_SPIOL3.066e-5957.78Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ1_ARATH1.333e-5457.96Oxygen-evolving enhancer protein 3-1, chloroplasti... [more]
PSBQ_ONOVI8.370e-4952.63Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ_ORYSJ1.806e-4347.89Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ_ORYSI1.806e-4347.89Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ1_MAIZE3.081e-4347.96Oxygen-evolving enhancer protein 3-1, chloroplasti... [more]
PSBQ2_MAIZE1.481e-3743.18Oxygen-evolving enhancer protein 3-2, chloroplasti... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-090-H06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688659 ID=EY688659; Name=EY688659; organism=Citrus sinensis; type=EST; length=859bp
CAAAGTTTCTGAAACCTGATTTAGTGAAAAATGGCACAAGCTATGGCGTC
AATGGCTGGCTTACGTGGATCCTCCCACTCGCAGGCTGTTCTTGAAGGTA
GCTCCCAGCTCAGTGGCCCAAACCGCTTGAACGCCCCTAGCAACAGCAGA
GTTGCTGTGGCTCGCTCTGGTTTCACTGTTAGAGCCCAGCAGGCATCAAA
CGAGCCTGAAACTAGCCGCCGTGCTATGATTGGTCTTGTTGCTGCAGGTG
TGGCCTCAGGTTCCTTTGTTCAAGCTGTACTTGCTGATGCCACTCCCATC
AAAGTTGGTCCTCCTCCTCCACCCTCTGGCGGATTGCCTGGAACGTTGAA
CTCTGATGAGCCAAGAGACCTGGATCTGCCACTGAAGGAGAGGTTCTTCA
TCCAACCACTTAGTCCAGCCCAGGCGGCAGAGAGAGCAAAGGCGTCAGCA
AAGGATATTCTTAATGTCAAGGAATTAATAGACAAGAAGGCCTGGCCCTA
TGTTCAGAATGATCTCCGTCTCAGGGCCTCATACCTTCGCTATGACCTCA
ACACTATCATTTCTGCTAAGCCCAAAGATGAGAAACAATCCCTCAAGAAC
CTCACTGGAAAGCTCTTCCAAAACCATCCGGCAATCTTGACCATGCGGGC
AAAGAATAAGAGCACTCCTGAACCAAAGAAATACTATGCTGAAACTGTAT
CTACCCGGAACGAGGTCTCCTCCCAGGTGGCTAAACCAAAATTAATAAAT
TTGGATGAAACTAAAATTTTTTATTTTTGGAGGGAACCACCTTCTGTGAA
ATTTTATTGGACAGTTGGCCGTGCCGCCTGAAAAAAAAAAAAACACAAGG
GCGGGCCAC
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