EY688655

Overview
NameEY688655
Unique NameEY688655
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length836
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY688655 vs. ExPASy Swiss-Prot
Match: PSAG_ARATH (Photosystem I reaction center subunit V, chloroplastic OS=Arabidopsis thaliana GN=PSAG PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.215e-14
Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 2 
Query:   32 SNDPVGFNIVDVLAWGSPPHIVAYYILATSSNGYDPKFFG 151
            SNDP+GFNIVDVLAWGS  HIVAYYILATSSNGYDP FFG
Sbjct:  121 SNDPIGFNIVDVLAWGSIGHIVAYYILATSSNGYDPSFFG 160
[Close]
BLAST of EY688655 vs. ExPASy Swiss-Prot
Match: PSAG_HORVU (Photosystem I reaction center subunit V, chloroplastic OS=Hordeum vulgare GN=PSAG PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.418e-14
Identity = 35/40 (87.50%), Postives = 37/40 (92.50%), Query Frame = 2 
Query:   32 SNDPVGFNIVDVLAWGSPPHIVAYYILATSSNGYDPKFFG 151
            SNDPVGFN+VDVLAWGS  HIVAYYILAT+SNGYDP FFG
Sbjct:  104 SNDPVGFNLVDVLAWGSIGHIVAYYILATTSNGYDPPFFG 143
[Close]
BLAST of EY688655 vs. ExPASy Swiss-Prot
Match: PSAG_SPIOL (Photosystem I reaction center subunit V, chloroplastic OS=Spinacia oleracea GN=PSAG PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.875e-13
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 2 
Query:   32 SNDPVGFNIVDVLAWGSPPHIVAYYILATSSNGYDPKFF 148
            SNDPVGFNIVDVLAWGS  HIVAYYILAT+SNGYDP FF
Sbjct:  129 SNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDPSFF 167
The following BLAST results are available for this feature:
BLAST of EY688655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PSAG_ARATH2.215e-1490.00Photosystem I reaction center subunit V, chloropla... [more]
PSAG_HORVU8.418e-1487.50Photosystem I reaction center subunit V, chloropla... [more]
PSAG_SPIOL1.875e-1389.74Photosystem I reaction center subunit V, chloropla... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-090-H01-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688655 ID=EY688655; Name=EY688655; organism=Citrus sinensis; type=EST; length=836bp
CACGCGTCCGGGAATATGTTAGCCTCCTCCATCTAACGACCCAGTTGGCT
TTAACATTGTTGATGTTCTTGCTTGGGGTTCCCCCCCCCATATTGTCGCT
TACTACATCTTGGCCACCTCCAGCAACGGCTATGATCCCAAGTTCTTTGG
TTGATTTTGATATTTGGAAGTGAACGCCTTCCCCTGTCCCCACCACCCCC
CAGCGCGCAGTCAGAGACAGGAACAACCAAACACAGCGCGAAGGCGGAGA
GCGACCAGCGGCAAGCGAAGACCCCGCACGCGCCGCCCGCNATGAGGCAG
AAACCAGCGCAAGAACAGGTAACGAAGACGAGCCACAGCCGGGACCGCAC
CCCAAGGCATGGAAAACCACACGGGCGCCCGCCACGGAGGCAGGCGAAAG
AGCCCAGCAGGGCGAACGACCACCACCGGTAGCAAACACACAACAGACGC
AGCCACAACACCGCAGCCACAACCCCCACACCACACACCCCGCACCCAGC
AGCGCGGAAGCAAACCGCGCCCGAGCACGAGACACAGCCACAGACCCACA
GCCAAAAAACGCCCGCAACACGCCACCGCCCACCCCAACACACAGACCAC
GCCCACGAGCCCCCGCGCCACACCCGCCACCGACCCGCAAGAAGCAGACG
AAAGACCACCGCCACACCCACGCCACCGACGACCACCCCGCCCCCACCGC
CACCACCCCCCACCCAAACACACAAAAACACCCACCCCAAGAAAACCCAG
AAGGAACAGCGAAGAGGACGAGGCGACAGAAGGCAAGACACGAACAAGAC
ACACACGAAACACAACAACCCAACAACCAGCCGAAC
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