EY688628

Overview
NameEY688628
Unique NameEY688628
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY688628 vs. ExPASy Swiss-Prot
Match: PSAD_CUCSA (Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=psaD PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.102e-40
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 3
Query:    3 LARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYDL 242
            LARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQN+RSIGKNVSPIEVKFTGKQVYDL
Sbjct:  128 LARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207          
BLAST of EY688628 vs. ExPASy Swiss-Prot
Match: PSAD_SOLLC (Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum GN=psaD PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 3.001e-38
Identity = 75/80 (93.75%), Postives = 77/80 (96.25%), Query Frame = 3
Query:    3 LARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYDL 242
            LARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQN+RSIGKN S IEVKFTGKQVYD+
Sbjct:  129 LARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNFRSIGKNKSAIEVKFTGKQVYDI 208          
BLAST of EY688628 vs. ExPASy Swiss-Prot
Match: PSAD_SPIOL (Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea GN=psaD PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 8.733e-38
Identity = 75/80 (93.75%), Postives = 77/80 (96.25%), Query Frame = 3
Query:    3 LARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYDL 242
            LARKEQCLALGTRLRSKYKIKYQFYRVFP+GEVQYLHPKDGVYPEKVNPGR+GVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct:  133 LARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGVYPEKVNPGRQGVGLNMRSIGKNVSPIEVKFTGKQPYDL 212          
BLAST of EY688628 vs. ExPASy Swiss-Prot
Match: PSAD_NICSY (Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris GN=psaD PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.141e-37
Identity = 74/80 (92.50%), Postives = 77/80 (96.25%), Query Frame = 3
Query:    3 LARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYDL 242
            LARKEQCLALGTRLRSKYKI Y+FYRVFPNGEVQYLHPKDGVYPEKVN GR+GVGQN+RSIGKN SPIEVKFTGKQVYDL
Sbjct:  125 LARKEQCLALGTRLRSKYKINYRFYRVFPNGEVQYLHPKDGVYPEKVNAGRQGVGQNFRSIGKNKSPIEVKFTGKQVYDL 204          
BLAST of EY688628 vs. ExPASy Swiss-Prot
Match: PSAD2_ARATH (Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana GN=psaD2 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.490e-37
Identity = 75/80 (93.75%), Postives = 75/80 (93.75%), Query Frame = 3
Query:    3 LARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYDL 242
            LARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPGREGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct:  125 LARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPGREGVGLNMRSIGKNVSPIEVKFTGKQSYDL 204          
BLAST of EY688628 vs. ExPASy Swiss-Prot
Match: PSAD1_ARATH (Photosystem I reaction center subunit II-1, chloroplastic OS=Arabidopsis thaliana GN=psaD1 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.490e-37
Identity = 75/80 (93.75%), Postives = 75/80 (93.75%), Query Frame = 3
Query:    3 LARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYDL 242
            LARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPGREGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct:  129 LARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPGREGVGLNMRSIGKNVSPIEVKFTGKQSYDL 208          
BLAST of EY688628 vs. ExPASy Swiss-Prot
Match: PSAD_HORVU (Photosystem I reaction center subunit II, chloroplastic OS=Hordeum vulgare GN=psaD PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.669e-36
Identity = 71/80 (88.75%), Postives = 75/80 (93.75%), Query Frame = 3
Query:    3 LARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYDL 242
            LARKEQCLALG RLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVN GR+GVGQN+RSIGKNVSPIEVKFTGK  +D+
Sbjct:  126 LARKEQCLALGNRLRSKYKIAYQFYRVFPNGEVQYLHPKDGVYPEKVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFDI 205          
BLAST of EY688628 vs. ExPASy Swiss-Prot
Match: PSAD_PORPU (Photosystem I reaction center subunit II OS=Porphyra purpurea GN=psaD PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.001e-25
Identity = 56/80 (70.00%), Postives = 64/80 (80.00%), Query Frame = 3
Query:    3 LARKEQCLALGTRLRSKYKIK-YQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYD 239
            LA+KEQCLALGT+L+ K+KI  Y+ YRVFPNGEVQYLHPKDGV+PEKVN GR  +     SIGKNV+PI VKFT K  YD
Sbjct:   62 LAKKEQCLALGTQLKGKFKISDYKIYRVFPNGEVQYLHPKDGVFPEKVNAGRASINSVDHSIGKNVNPINVKFTNKATYD 141          
BLAST of EY688628 vs. ExPASy Swiss-Prot
Match: PSAD_PORYE (Photosystem I reaction center subunit II OS=Porphyra yezoensis GN=psaD PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.806e-25
Identity = 54/80 (67.50%), Postives = 65/80 (81.25%), Query Frame = 3
Query:    3 LARKEQCLALGTRLRSKYKIK-YQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYD 239
            LA+KEQCLALGT+L+SK+KI  Y+ YRVFPNGEVQYLHPKDGV+PEKVN GR  V     SIG+N++P++VKF  K  YD
Sbjct:   62 LAKKEQCLALGTQLKSKFKISDYKIYRVFPNGEVQYLHPKDGVFPEKVNTGRASVNSVDHSIGQNINPVDVKFMNKATYD 141          
BLAST of EY688628 vs. ExPASy Swiss-Prot
Match: PSAD_GUITH (Photosystem I reaction center subunit II OS=Guillardia theta GN=psaD PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.491e-25
Identity = 53/80 (66.25%), Postives = 66/80 (82.50%), Query Frame = 3
Query:    3 LARKEQCLALGTRLRSKYKIK-YQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYD 239
            LARKEQCLALGT++++ +KI  Y+ YR+FP+GEVQYLHPKDGV+PEKVNPGR GVG    SIGKN++P ++KFT K   D
Sbjct:   62 LARKEQCLALGTQVKTSFKITDYKIYRIFPSGEVQYLHPKDGVFPEKVNPGRIGVGNVSHSIGKNLNPAQIKFTNKSFCD 141          
The following BLAST results are available for this feature:
BLAST of EY688628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
PSAD_CUCSA1.102e-4098.75Photosystem I reaction center subunit II, chloropl... [more]
PSAD_SOLLC3.001e-3893.75Photosystem I reaction center subunit II, chloropl... [more]
PSAD_SPIOL8.733e-3893.75Photosystem I reaction center subunit II, chloropl... [more]
PSAD_NICSY1.141e-3792.50Photosystem I reaction center subunit II, chloropl... [more]
PSAD2_ARATH1.490e-3793.75Photosystem I reaction center subunit II-2, chloro... [more]
PSAD1_ARATH1.490e-3793.75Photosystem I reaction center subunit II-1, chloro... [more]
PSAD_HORVU3.669e-3688.75Photosystem I reaction center subunit II, chloropl... [more]
PSAD_PORPU1.001e-2570.00Photosystem I reaction center subunit II OS=Porphy... [more]
PSAD_PORYE3.806e-2567.50Photosystem I reaction center subunit II OS=Porphy... [more]
PSAD_GUITH6.491e-2566.25Photosystem I reaction center subunit II OS=Guilla... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-090-E04-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688628 ID=EY688628; Name=EY688628; organism=Citrus sinensis; type=EST; length=864bp
AGCTGGCTAGGAAAGAGCAGTGCTTGGCTCTGGGGACAAGGCTGAGGTCC
AAGTACAAGATTAAGTACCAGTTTTACCGAGTGTTTCCCAATGGAGAGGT
TCAGTATTTGCATCCCAAGGATGGTGTTTATCCTGAGAAAGTGAACCCCG
GAAGGGAAGGAGTTGGGCAGAATTACAGGTCTATTGGTAAGAATGTGAGT
CCTATTGAGGTCAAGTTTACAGGGAAGCAAGTGTATGATCTGTAAATTTA
AATTGTAAGCTGCTAAGCTGACGGGCCTCGGATGATCTGTTGATTAATTG
TTGTGATCCTTTACTTGTTTGCATTCGTGATTTGAGTACGTAGAGAATAC
AGTGTGAAAGGATAAGTTCGATAAGGGGCCCAACAAAGCCGCCGGGGGGG
GGGGGGGGAGCCCCACCCACATGGGCGAGACCCCGGGCACCCCGACCCGC
CCCCCGCACCACCCCCCCGCGCACGCGGGCCGCCGCAGGGGAACACGCGA
GCGCGGAGCCCCGCCGAGGACAAACGCAACCACCGGCCCCACACGACCGC
CAAGAGAACCCAAACCGTCGCGGGGTACTCAGCCCGCTCAACGGGCGGAC
GCGCGACGAGAAAAAACGCCGAAGGGAACCAGACGAAAACCACAGACACC
ACAAAACCACAAGCAACAACAAAACCAAAGACAAAGAGAAAAAACACGAC
GGAGCAGAACAACGACAGGCAGACAAGAGACGCGAACCCAAGACGCCAGG
AACCCCGCCCGCCACGAACGCGCCAGCCAAGACCAAACACGAACCAACCG
ACGGCCGGGGCACGGCAGGAGGGAGCGGACAGCAGCCCTACCAAGAAAAA
AACGCGAAACGAGC
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