EY688618

Overview
NameEY688618
Unique NameEY688618
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY688618 vs. ExPASy Swiss-Prot
Match: YJIR_ECOLI (Uncharacterized HTH-type transcriptional regulator yjiR OS=Escherichia coli (strain K12) GN=yjiR PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.327e-36
Identity = 72/124 (58.06%), Postives = 89/124 (71.77%), Query Frame = 2
Query:    2 ALLTLAQRFDVAIIEDDVYGELAYSYPRPRTIKSFDEDGRVVLCSSFSKTLAPGLRIGWVAPGRYLERVLHMKYISTGATATPPQIAIAEFPENGHFEPHLRRMRQQYQNTPDLMLN*VSRYFP 373
            A+L+LAQR D+ I EDDVYGELA  YPRPRTI S+D DGRV+LCSSFSK++APGLR+GWVAPGRY ++++HMKY  +       Q+A A F   GH+  H+RRMRQ YQ    L    +  YFP
Sbjct:  265 AVLSLAQRHDIVIFEDDVYGELATEYPRPRTIHSWDIDGRVLLCSSFSKSIAPGLRVGWVAPGRYHDKLMHMKYAISSFNVPSTQMAAATFVLEGHYHRHIRRMRQIYQRNLALYTCWIREYFP 388          
BLAST of EY688618 vs. ExPASy Swiss-Prot
Match: YDCR_ECOLI (Uncharacterized HTH-type transcriptional regulator ydcR OS=Escherichia coli (strain K12) GN=ydcR PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.937e-20
Identity = 46/123 (37.40%), Postives = 75/123 (60.98%), Query Frame = 2
Query:    5 LLTLAQRFDVAIIEDDVYGELAYSYPRPRTIKSFDEDGRVVLCSSFSKTLAPGLRIGWVAPGRYLERVLHMKYISTGATATPPQIAIAEFPENGHFEPHLRRMRQQYQNTPDLMLN*VSRYFP 373
            L+ L  +++V +IEDDVY EL +   +P   K++D    V+ CSSFSK L PG RIGWVA G++  ++  ++ +ST +T++P Q+A+ ++     ++ HLRR+R+Q           + RY P
Sbjct:  265 LVALLNQYNVTLIEDDVYSELYFGREKPLPAKAWDRHDGVLHCSSFSKCLVPGFRIGWVAAGKHARKIQRLQLMSTLSTSSPMQLALVDYLSTRRYDAHLRRLRRQLAERKQRAWQALLRYLP 387          
BLAST of EY688618 vs. ExPASy Swiss-Prot
Match: Y104_SULSO (Uncharacterized aminotransferase SSO0104 OS=Sulfolobus solfataricus GN=SSO0104 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.100e-15
Identity = 47/124 (37.90%), Postives = 70/124 (56.45%), Query Frame = 2
Query:    5 LLTLAQRFDVAIIEDDVYGELAYSYPRPRTIKSFDEDGRVVLCSSFSKTLAPGLRIGWV-APGRYLERVLHMKYISTGATATPPQIAIAEFPENGHFEPHLRRMRQQYQNTPDLMLN*VSRYFP 373
            LL +A ++D  I EDD YG L +    P  IK+FD++GRV+  S+FSK LAPGLR+GWV A   +++ +   K      T +  Q    E    G  + +L ++R+ Y+   D+ML  +  YFP
Sbjct:  195 LLEIASKYDFLIFEDDAYGFLVFEGESPPPIKAFDKEGRVIYTSTFSKILAPGLRLGWVIAHEDFIKEMELYKQNVDLHTPSLSQYIAMEAIRRGIIQNNLPKIRRVYKEKRDVMLEAIETYFP 318          
BLAST of EY688618 vs. ExPASy Swiss-Prot
Match: YISV_BACSU (Uncharacterized HTH-type transcriptional regulator yisV OS=Bacillus subtilis GN=yisV PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.876e-15
Identity = 41/122 (33.61%), Postives = 76/122 (62.30%), Query Frame = 2
Query:    5 LLTLAQRFDVAIIEDDVYGELAYSYPRPRTIKSFDEDGRVVLCSSFSKTLAPGLRIGWVA-PGRYLERVLHMKYISTGATATPPQIAIAEFPENGHFEPHLRRMRQQYQNTPDLMLN*VSRY 367
            +++L+++  + IIEDD YG+L +    P+ +K+ D +G ++   +FSKT++PGLRIGW+A P   +ER+  +K  +   ++   Q A AE+   G++E HL  +R++ +   D  ++ + RY
Sbjct:  280 IISLSKKEQMPIIEDDAYGDLWFEEKPPQPLKAMDHEGNILYLGAFSKTVSPGLRIGWLAGPEPVIERLADIKMQTDYGSSGLSQWAAAEWLSQGYYEEHLTWVRRKLKERRDAAVHFLERY 401          
BLAST of EY688618 vs. ExPASy Swiss-Prot
Match: NORG_STAAB (HTH-type transcriptional regulator norG OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=norG PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 5.459e-15
Identity = 42/123 (34.15%), Postives = 78/123 (63.41%), Query Frame = 2
Query:    5 LLTLAQRFDVAIIEDDVYGELAYSYPRPRTIKSFDEDGRVVLCSSFSKTLAPGLRIGW-VAPGRYLERVLHMKYISTGATATPPQIAIAEFPENGHFEPHLRRMRQQYQNTPDLMLN*VSRYF 370
            ++T ++R ++ IIEDD++ ++ +S P P  IK+FD+ G+V+  SSFSKT+AP +RIGW VA  + +E++  ++      ++   Q+ + E  +N  ++ HL ++R   ++  D MLN ++  F
Sbjct:  242 IITYSERHNIPIIEDDIFRDIFFSDPTP-AIKTFDKLGKVIHISSFSKTIAPAIRIGWIVASEKIIEQLADVRMQIDYGSSILSQMVVYEMLKNKSYDKHLVKLRYVLKDKRDFMLNILNNLF 363          
BLAST of EY688618 vs. ExPASy Swiss-Prot
Match: NORG_STAAC (HTH-type transcriptional regulator norG OS=Staphylococcus aureus (strain COL) GN=norG PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 9.312e-15
Identity = 41/123 (33.33%), Postives = 79/123 (64.23%), Query Frame = 2
Query:    5 LLTLAQRFDVAIIEDDVYGELAYSYPRPRTIKSFDEDGRVVLCSSFSKTLAPGLRIGW-VAPGRYLERVLHMKYISTGATATPPQIAIAEFPENGHFEPHLRRMRQQYQNTPDLMLN*VSRYF 370
            ++T ++R ++ IIEDD++ ++ +S P P +IK++D+ G+V+  SSFSKT+AP +RIGW VA  + +E++  ++      ++   Q+ + E  +N  ++ HL ++R   ++  D MLN ++  F
Sbjct:  242 IITYSERHNIPIIEDDIFRDIFFSDPTP-SIKTYDKLGKVIHISSFSKTIAPAIRIGWIVASEKIIEQLADVRMQIDYGSSILSQMVVYEMLKNKSYDKHLVKLRYVLKDKRDFMLNILNNLF 363          
BLAST of EY688618 vs. ExPASy Swiss-Prot
Match: NORG_STAA8 (HTH-type transcriptional regulator norG OS=Staphylococcus aureus (strain NCTC 8325) GN=norG PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 9.312e-15
Identity = 41/123 (33.33%), Postives = 79/123 (64.23%), Query Frame = 2
Query:    5 LLTLAQRFDVAIIEDDVYGELAYSYPRPRTIKSFDEDGRVVLCSSFSKTLAPGLRIGW-VAPGRYLERVLHMKYISTGATATPPQIAIAEFPENGHFEPHLRRMRQQYQNTPDLMLN*VSRYF 370
            ++T ++R ++ IIEDD++ ++ +S P P +IK++D+ G+V+  SSFSKT+AP +RIGW VA  + +E++  ++      ++   Q+ + E  +N  ++ HL ++R   ++  D MLN ++  F
Sbjct:  242 IITYSERHNIPIIEDDIFRDIFFSDPTP-SIKTYDKLGKVIHISSFSKTIAPAIRIGWIVASEKIIEQLADVRMQIDYGSSILSQMVVYEMLKNKSYDKHLVKLRYVLKDKRDFMLNILNNLF 363          
BLAST of EY688618 vs. ExPASy Swiss-Prot
Match: NORG_STAA3 (HTH-type transcriptional regulator norG OS=Staphylococcus aureus (strain USA300) GN=norG PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 9.312e-15
Identity = 41/123 (33.33%), Postives = 79/123 (64.23%), Query Frame = 2
Query:    5 LLTLAQRFDVAIIEDDVYGELAYSYPRPRTIKSFDEDGRVVLCSSFSKTLAPGLRIGW-VAPGRYLERVLHMKYISTGATATPPQIAIAEFPENGHFEPHLRRMRQQYQNTPDLMLN*VSRYF 370
            ++T ++R ++ IIEDD++ ++ +S P P +IK++D+ G+V+  SSFSKT+AP +RIGW VA  + +E++  ++      ++   Q+ + E  +N  ++ HL ++R   ++  D MLN ++  F
Sbjct:  242 IITYSERHNIPIIEDDIFRDIFFSDPTP-SIKTYDKLGKVIHISSFSKTIAPAIRIGWIVASEKIIEQLADVRMQIDYGSSILSQMVVYEMLKNKSYDKHLVKLRYVLKDKRDFMLNILNNLF 363          
BLAST of EY688618 vs. ExPASy Swiss-Prot
Match: NORG_STAAN (HTH-type transcriptional regulator norG OS=Staphylococcus aureus (strain N315) GN=norG PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.216e-14
Identity = 41/123 (33.33%), Postives = 78/123 (63.41%), Query Frame = 2
Query:    5 LLTLAQRFDVAIIEDDVYGELAYSYPRPRTIKSFDEDGRVVLCSSFSKTLAPGLRIGW-VAPGRYLERVLHMKYISTGATATPPQIAIAEFPENGHFEPHLRRMRQQYQNTPDLMLN*VSRYF 370
            ++T ++R ++ IIEDD++ ++ +S P P  IK++D+ G+V+  SSFSKT+AP +RIGW VA  + +E++  ++      ++   Q+ + E  +N  ++ HL ++R   ++  D MLN ++  F
Sbjct:  242 IITYSERHNIPIIEDDIFRDIFFSDPTP-AIKTYDKLGKVIHISSFSKTIAPAIRIGWIVASEKIIEQLADVRMQIDYGSSILSQMVVYEMLKNKSYDKHLVKLRYVLKDKRDFMLNILNNLF 363          
BLAST of EY688618 vs. ExPASy Swiss-Prot
Match: NORG_STAAM (HTH-type transcriptional regulator norG OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=norG PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.216e-14
Identity = 41/123 (33.33%), Postives = 78/123 (63.41%), Query Frame = 2
Query:    5 LLTLAQRFDVAIIEDDVYGELAYSYPRPRTIKSFDEDGRVVLCSSFSKTLAPGLRIGW-VAPGRYLERVLHMKYISTGATATPPQIAIAEFPENGHFEPHLRRMRQQYQNTPDLMLN*VSRYF 370
            ++T ++R ++ IIEDD++ ++ +S P P  IK++D+ G+V+  SSFSKT+AP +RIGW VA  + +E++  ++      ++   Q+ + E  +N  ++ HL ++R   ++  D MLN ++  F
Sbjct:  242 IITYSERHNIPIIEDDIFRDIFFSDPTP-AIKTYDKLGKVIHISSFSKTIAPAIRIGWIVASEKIIEQLADVRMQIDYGSSILSQMVVYEMLKNKSYDKHLVKLRYVLKDKRDFMLNILNNLF 363          
The following BLAST results are available for this feature:
BLAST of EY688618 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
YJIR_ECOLI7.327e-3658.06Uncharacterized HTH-type transcriptional regulator... [more]
YDCR_ECOLI1.937e-2037.40Uncharacterized HTH-type transcriptional regulator... [more]
Y104_SULSO1.100e-1537.90Uncharacterized aminotransferase SSO0104 OS=Sulfol... [more]
YISV_BACSU1.876e-1533.61Uncharacterized HTH-type transcriptional regulator... [more]
NORG_STAAB5.459e-1534.15HTH-type transcriptional regulator norG OS=Staphyl... [more]
NORG_STAAC9.312e-1533.33HTH-type transcriptional regulator norG OS=Staphyl... [more]
NORG_STAA89.312e-1533.33HTH-type transcriptional regulator norG OS=Staphyl... [more]
NORG_STAA39.312e-1533.33HTH-type transcriptional regulator norG OS=Staphyl... [more]
NORG_STAAN1.216e-1433.33HTH-type transcriptional regulator norG OS=Staphyl... [more]
NORG_STAAM1.216e-1433.33HTH-type transcriptional regulator norG OS=Staphyl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-090-D04-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688618 ID=EY688618; Name=EY688618; organism=Citrus sinensis; type=EST; length=599bp
CGCGCTGCTGACCCTGGCCCAGCGCTTCGACGTGGCAATCATCGAAGACG
ATGTGTATGGCGAACTGGCCTACAGCTACCCGCGTCCACGCACTATCAAG
TCCTTCGACGAAGATGGCCGCGTCGTACTGTGCAGTTCCTTCTCGAAAAC
CCTGGCGCCCGGCCTGCGGATTGGCTGGGTAGCACCCGGTCGTTACCTCG
AGCGCGTCCTGCACATGAAATACATCAGCACCGGCGCCACCGCGACCCCG
CCGCAGATCGCGATTGCCGAGTTTCCTGAAAATGGCCATTTCGAACCGCA
TTTGCGGAGGATGCGTCAGCAATACCAGAATACTCCCGACCTCATGCTCA
ATTGAGTCAGCCGCTATTTCCCGGGCCGGCACACGAGAAAAGAATACAAA
GGTAAGATACATGAAGCGAGGGGAGAAGGCACTGAAAGAAACAACCCAGA
AACCCAACCCGCAGGATGAGGAAAACAAGTGAACAAAGGACAAGGGGGGA
GAACTAAAACCACTCCCAACCCTGCACAAGCTGACCGCCCTAGAAGGCGA
AGAAAAAGACCACCGCGAGAAAACAAAAACAACACCGCAAGGAGCGACG
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