EY688578

Overview
NameEY688578
Unique NameEY688578
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4440 contig Csv1_Contig4440:474..1121. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY688578 vs. ExPASy Swiss-Prot
Match: DHNA_ARATH (Probable NADH dehydrogenase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NDC1 PE=1 SV=2)

HSP 1 Score: 260.381 bits (664), Expect = 5.860e-69
Identity = 124/149 (83.22%), Postives = 138/149 (92.62%), Query Frame = 3
Query:    3 LNARGQAETDETLRVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVFSSS 449
            LNARGQAETDETLRVKGHPRIFALGDSS+LRDS+G+ LP TAQVAFQ+ADF GWN+WAAIN+RPLLPFRFQNLGEMM LGR DAA+SPSF+EG+TL+GPIGH+ARKLAYLIRLPTDEHR KVG+SW  KSA+DS+ALLQS LTKV S S
Sbjct:  371 LNARGQAETDETLRVKGHPRIFALGDSSSLRDSNGKILPTTAQVAFQEADFTGWNIWAAINNRPLLPFRFQNLGEMMTLGRYDAAISPSFIEGLTLEGPIGHAARKLAYLIRLPTDEHRFKVGISWFAKSAVDSIALLQSNLTKVLSGS 519          
The following BLAST results are available for this feature:
BLAST of EY688578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DHNA_ARATH5.860e-6983.22Probable NADH dehydrogenase, chloroplastic/mitocho... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-089-G07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688578 ID=EY688578; Name=EY688578; organism=Citrus sinensis; type=EST; length=648bp
CCCTTAATGCTCGAGGACAAGCAGAAACGGATGAAACTCTCCGTGTTAAG
GGCCATCCTCGTATATTTGCACTTGGTGACTCTTCTGCTCTACGAGATTC
AAGTGGAAGGCCTCTTCCAGCAACTGCACAGGTTGCCTTTCAACAGGCTG
ACTTTGCTGGTTGGAATCTGTGGGCAGCAATCAATGATCGGCCATTGTTA
CCCTTCAGGTTTCAAAATTTAGGGGAGATGATGATTCTTGGTAGAAACGA
TGCTGCTGTCTCACCAAGTTTTGTTGAGGGGGTAACGTTAGATGGCCCTA
TTGGTCACAGCGCGAGGAAATTAGCATACTTGATCAGATTACCGACCGAT
GAGCACCGGCTTAAAGTTGGAGTCAGCTGGCTCACCAAGTCTGCCATAGA
TTCAGTTGCTTTATTACAGAGCACCTTAACAAAGGTTTTCTCAAGCTCAT
AGATTCTCTTATAAGACGAGGCCGAGTAGCACATGCCTTTGTTGTATTTC
GTAGACAACTGCTTCCTGTCAATTTGTCGATGGAATATCGAAAGTCGATG
TCCTGTACGGAGCTCTTTTCTCTTTGTTTTGTACCTTTTTANATTGAATG
TGTTTCATATGCTTTAATCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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