EY688577

Overview
NameEY688577
Unique NameEY688577
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY688577_ssr703 microsatellite EY688577_ssr703:703..714. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9011 contig Csv1_Contig9011:1..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY688577 vs. ExPASy Swiss-Prot
Match: T2AG_ARATH (Transcription initiation factor IIA subunit 2 OS=Arabidopsis thaliana GN=TFIIA-S PE=2 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 5.018e-49
Identity = 95/106 (89.62%), Postives = 103/106 (97.17%), Query Frame = 2
Query:  101 MATFELYRRSTIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIKGHLHTYRFCDNVWTFILQDALFKSEELQETVGRVKIVACDSKLLSQ 418
            MATFELYRRSTIGMCLTETLDEMVQ+GTL+PELAIQVLVQFDKSMTEALE+QVK+KVSIKGHLHTYRFCDNVWTFILQDA+FKS++ QE V RVKIVACDSKLL+Q
Sbjct:    1 MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIKGHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ 106          
BLAST of EY688577 vs. ExPASy Swiss-Prot
Match: T2AG_ORYSJ (Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. japonica GN=TFIIAy PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.108e-47
Identity = 94/106 (88.68%), Postives = 99/106 (93.40%), Query Frame = 2
Query:  101 MATFELYRRSTIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIKGHLHTYRFCDNVWTFILQDALFKSEELQETVGRVKIVACDSKLLSQ 418
            MATFELYRRSTIGMCLTETLDEMV +GTL+PELAIQVLVQFDKSMTEALE QVKSKVSIKGHLHTYRFCDNVWTFIL +A FK+EE  E VG+VKIVACDSKLLSQ
Sbjct:    1 MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIKGHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ 106          
BLAST of EY688577 vs. ExPASy Swiss-Prot
Match: T2AG_ORYSI (Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. indica GN=TFIIAy PE=3 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 2.108e-47
Identity = 94/106 (88.68%), Postives = 99/106 (93.40%), Query Frame = 2
Query:  101 MATFELYRRSTIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIKGHLHTYRFCDNVWTFILQDALFKSEELQETVGRVKIVACDSKLLSQ 418
            MATFELYRRSTIGMCLTETLDEMV +GTL+PELAIQVLVQFDKSMTEALE QVKSKVSIKGHLHTYRFCDNVWTFIL +A FK+EE  E VG+VKIVACDSKLLSQ
Sbjct:    1 MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIKGHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ 106          
BLAST of EY688577 vs. ExPASy Swiss-Prot
Match: T2AG_ONCMY (Transcription initiation factor IIA subunit 2 OS=Oncorhynchus mykiss GN=gtf2a2 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.600e-25
Identity = 52/99 (52.53%), Postives = 74/99 (74.75%), Query Frame = 2
Query:  110 FELYRRSTIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIKGHLHTYRFCDNVWTFILQDALFKSEELQETVGRVKIVACDSK 406
            ++LYR +T+G  L E+LDE++Q   +TP+LA+QVL+QFDK++  AL  +V+++V+ KG L+TYRFCDNVWTF+L D  F+       V +VKIVACD K
Sbjct:    3 YQLYRNTTLGNSLQESLDELIQTQQITPQLALQVLLQFDKAINTALANRVRNRVNFKGSLNTYRFCDNVWTFVLNDVEFREVTDLVKVDKVKIVACDGK 101          
BLAST of EY688577 vs. ExPASy Swiss-Prot
Match: T2AG_PAROL (Transcription initiation factor IIA subunit 2 OS=Paralichthys olivaceus GN=gtf2a2 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.620e-25
Identity = 53/108 (49.07%), Postives = 78/108 (72.22%), Query Frame = 2
Query:  110 FELYRRSTIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIKGHLHTYRFCDNVWTFILQDALFKSEELQETVGRVKIVACDSKLLSQ*DNED 433
            ++LYR +T+G  L E+LDE++Q   +TP+LA+QVL+QFDK++  AL ++V+++V+ +G L+TYRFCDNVWTF+L D  F+       V +VKIVACD K  S  +  D
Sbjct:    3 YQLYRNTTLGNSLQESLDELIQTQQITPQLALQVLLQFDKAINTALASRVRNRVNFRGSLNTYRFCDNVWTFVLNDVEFREVTDLVKVDKVKIVACDGKSESTQNKSD 110          
BLAST of EY688577 vs. ExPASy Swiss-Prot
Match: T2AG_RAT (Transcription initiation factor IIA subunit 2 OS=Rattus norvegicus GN=Gtf2a2 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.126e-24
Identity = 51/99 (51.52%), Postives = 75/99 (75.76%), Query Frame = 2
Query:  110 FELYRRSTIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIKGHLHTYRFCDNVWTFILQDALFKSEELQETVGRVKIVACDSK 406
            ++LYR +T+G  L E+LDE++Q+  +TP+LA+QVL+QFDK++  AL  +V+++V+ +G L+TYRFCDNVWTF+L D  F+       V +VKIVACD K
Sbjct:    3 YQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINSALAQRVRNRVNFRGSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGK 101          
BLAST of EY688577 vs. ExPASy Swiss-Prot
Match: T2AG_MOUSE (Transcription initiation factor IIA subunit 2 OS=Mus musculus GN=Gtf2a2 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.126e-24
Identity = 51/99 (51.52%), Postives = 75/99 (75.76%), Query Frame = 2
Query:  110 FELYRRSTIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIKGHLHTYRFCDNVWTFILQDALFKSEELQETVGRVKIVACDSK 406
            ++LYR +T+G  L E+LDE++Q+  +TP+LA+QVL+QFDK++  AL  +V+++V+ +G L+TYRFCDNVWTF+L D  F+       V +VKIVACD K
Sbjct:    3 YQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINSALAQRVRNRVNFRGSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGK 101          
BLAST of EY688577 vs. ExPASy Swiss-Prot
Match: T2AG_HUMAN (Transcription initiation factor IIA subunit 2 OS=Homo sapiens GN=GTF2A2 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.470e-24
Identity = 51/99 (51.52%), Postives = 75/99 (75.76%), Query Frame = 2
Query:  110 FELYRRSTIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIKGHLHTYRFCDNVWTFILQDALFKSEELQETVGRVKIVACDSK 406
            ++LYR +T+G  L E+LDE++Q+  +TP+LA+QVL+QFDK++  AL  +V+++V+ +G L+TYRFCDNVWTF+L D  F+       V +VKIVACD K
Sbjct:    3 YQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVRNRVNFRGSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGK 101          
BLAST of EY688577 vs. ExPASy Swiss-Prot
Match: T2AG_DICDI (Transcription initiation factor IIA subunit 2 OS=Dictyostelium discoideum GN=gtf2a2 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.278e-24
Identity = 55/101 (54.46%), Postives = 76/101 (75.25%), Query Frame = 2
Query:  110 FELYRRSTIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIKGHLHTYRFCDNVWTFILQDALFKSEELQ-ETVGRVKIVACDSKL 409
            +ELYR+STIG  LT+TL+E++ N  ++  L  ++L QFDK++ EAL   VK+K + KG LHTYRFCD+VWTFIL++A FK+E  +   V RVKIVACD+ +
Sbjct:    8 YELYRKSTIGEALTDTLEELLINQYISNSLYQKILTQFDKTINEALSNTVKAKTTFKGSLHTYRFCDSVWTFILENAQFKTEANEIVKVDRVKIVACDANV 108          
BLAST of EY688577 vs. ExPASy Swiss-Prot
Match: T2AG_DROME (Transcription initiation factor IIA subunit 2 OS=Drosophila melanogaster GN=TfIIA-S PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.621e-23
Identity = 53/101 (52.48%), Postives = 73/101 (72.28%), Query Frame = 2
Query:  107 TFELYRRSTIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIK-GHLHTYRFCDNVWTFILQDALFKSEELQETVGRVKIVACDSK 406
            +++LYR +T+G  L E+LDE++Q G +TP LA +VL+QFDKS+  AL  +VK++V+ K G L+TYRFCDNVWT +L D  F+       V +VKIVACD K
Sbjct:    2 SYQLYRNTTLGNTLQESLDELIQYGQITPGLAFKVLLQFDKSINNALNQRVKARVTFKAGKLNTYRFCDNVWTLMLNDVEFREVHEIVKVDKVKIVACDGK 102          
The following BLAST results are available for this feature:
BLAST of EY688577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
T2AG_ARATH5.018e-4989.62Transcription initiation factor IIA subunit 2 OS=A... [more]
T2AG_ORYSJ2.108e-4788.68Transcription initiation factor IIA subunit 2 OS=O... [more]
T2AG_ORYSI2.108e-4788.68Transcription initiation factor IIA subunit 2 OS=O... [more]
T2AG_ONCMY6.600e-2552.53Transcription initiation factor IIA subunit 2 OS=O... [more]
T2AG_PAROL8.620e-2549.07Transcription initiation factor IIA subunit 2 OS=P... [more]
T2AG_RAT1.126e-2451.52Transcription initiation factor IIA subunit 2 OS=R... [more]
T2AG_MOUSE1.126e-2451.52Transcription initiation factor IIA subunit 2 OS=M... [more]
T2AG_HUMAN1.470e-2451.52Transcription initiation factor IIA subunit 2 OS=H... [more]
T2AG_DICDI4.278e-2454.46Transcription initiation factor IIA subunit 2 OS=D... [more]
T2AG_DROME3.621e-2352.48Transcription initiation factor IIA subunit 2 OS=D... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-089-G05-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688577 ID=EY688577; Name=EY688577; organism=Citrus sinensis; type=EST; length=740bp
CGGACGCGTGGGCTCCGCCCCATTTATTCATCTTCACAGCAAACGTTCAA
CAAGTCTACCATTTAAATCAATCACCACCCCCCAATACATCACGTGAGAA
ATGGCGACGTTTGAGCTGTATCGCAGGTCGACGATTGGGATGTGCTTAAC
CGAGACTTTAGACGAGATGGTCCAAAACGGTACGCTTACTCCCGAGCTAG
CTATCCAGGTTCTCGTCCAGTTCGATAAGTCTATGACAGAAGCACTAGAA
ACTCAGGTGAAGAGCAAGGTCTCCATTAAGGGGCATCTGCACACCTACAG
GTTCTGTGACAATGTTTGGACATTCATCTTGCAAGATGCTTTGTTCAAGA
GTGAGGAATTACAAGAGACCGTTGGTAGGGTGAAAATAGTGGCATGTGAC
TCAAAGCTGCTATCACAATAAGACAATGAAGATTGGTGTGTTGCTGGGGG
ATTAGGTTAAATTACTTGGAGAAGGTGGCAATTATGCATTATTGATTAAC
ATAATTTGTAAAGCCGCCAACTGTTTTCAACTGGTGATGATTGTAAAGCC
ATTGAGGCTGCTACATCCTTGCTTTGTCGGATCTCTATAATGGGACCAAT
GGGAGCATGTTCCCCCACTGACCCATTAACCCTTAATATTTGCTTATGTG
TAGTAAAAGAATTAATTACATTAGCAATTAATAATTAAATTATTATAATC
TAAATTAATTAATTGTTGAAAAAAAAAAAAAAAAAAGGGC
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