EY688566

Overview
NameEY688566
Unique NameEY688566
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12177 contig Csv1_Contig12177:62..919. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY688566 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.643e-20
Identity = 71/255 (27.84%), Postives = 109/255 (42.75%), Query Frame = 3
Query:  105 KIPPSDDPTTGVRSKDVVISSEPPVFARIFIPYEA---------QNPNQNKL-PLLFYVRGGGFCGQSAFGPRYHNFCSVFSAQANAIVVSVEYGNFPDRPIPACYEDSWAALNWVASHAGGNGPEPWLNDHADFG-KVLIGGASAGGNIAHTLAFRVGSIGLPCVKLVGVIMVHPFFGGTSPEE----------------DATWLYMCPTNAGLQDPRLK---PPAEDLGRLGCEKVLIFVAEKNFLKPVAMNY 779
            K+P + +P  GV S DV+I  +  + +R++ P +A         QNP   ++ P++ +  GG F   SA    Y   C        A+VVSV Y   P+   P  Y+D WA L WV S +       WL    D   ++ + G S+GGNI H +A R        + ++G I+++P FGGT   E                D  W    P     + P      P ++ L  L   K L+ VA  + ++   + Y
Sbjct:   52 KVPANANPVNGVFSFDVIIDRQTNLLSRVYRPADAGTSPSITDLQNPVDGEIVPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNSSS-------WLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVE---SRIDVLGNILLNPMFGGTERTESEKRLDGKYFVTVRDRDWYWRAFLPEGEDREHPACSPFGPRSKSLEGLSFPKSLVVVAGLDLIQDWQLKY 296          
BLAST of EY688566 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.361e-19
Identity = 58/187 (31.02%), Postives = 84/187 (44.92%), Query Frame = 3
Query:  105 KIPPSDDPTTGVRSKDVVISSEPPVFARIFIPYEAQNPNQNKL------------PLLFYVRGGGFCGQSAFGPRYHNFCSVFSAQANAIVVSVEYGNFPDRPIPACYEDSWAALNWVASHAGGNGPEPWLNDHADFG-KVLIGGASAGGNIAHTLAFRVGSIGLPCVKLVGVIMVHPFFGGTSPEE 626
            K+  + +P  GV S DV+I     + +R++ P  A       +            P++ +  GG F   SA    Y   C         +VVSV Y   P+ P P  Y+D W ALNWV S +       WL    D    + + G S+GGNIAH +A R G  G   + ++G I+++P FGG    E
Sbjct:   52 KVTANANPVDGVFSFDVLIDRRINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNSRS-------WLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGESG---IDVLGNILLNPMFGGNERTE 228          
BLAST of EY688566 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.453e-18
Identity = 62/183 (33.88%), Postives = 84/183 (45.90%), Query Frame = 3
Query:  105 KIPPSDDPTTGVRSKDVVISSEPPVFARIFIPYEAQNPNQNK-------------LPLLFYVRGGGFCGQSAFGPRYHNFCSVFSAQANAIVVSVEYGNFPDRPIPACYEDSWAALNWVASHAGGNGPEPWLNDHADFG-KVLIGGASAGGNIAHTLAFRVGSIGLPCVKLVGVIMVHPFFGG 611
            K+P +  P  GV S D V  S   +  RI+ P    +  ++              +P+L +  GG F   SA    Y  FC         +VVSV+Y   P+   P  Y+D W ALNWV S         WL    D    V + G S+GGNIAH +A R  + G   VK++G I++HP FGG
Sbjct:   52 KVPANSFPLDGVFSFDHV-DSTTNLLTRIYQPASLLHQTRHGTLELTKPLSTTEIVPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSRV-------WLQSGKDSNVYVYLAGDSSGGNIAHNVAVRATNEG---VKVLGNILLHPMFGG 223          
BLAST of EY688566 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.770e-17
Identity = 66/240 (27.50%), Postives = 95/240 (39.58%), Query Frame = 3
Query:  105 KIPPSDDPTTGVRSKDVVISSEPPVFARIF-------------------IPYEAQNPNQNKLPLLFYVRGGGFCGQSAFGPRYHNFCSVFSAQANAIVVSVEYGNFPDRPIPACYEDSWAALNWVASHAGGNGPEPWLNDHADF-GKVLIGGASAGGNIAHTLAFRVGSIGLPCVKLVGVIMVHPFFGGTSPEE----------------DATWLYMCPTNAGLQDPRLKPPAEDLGRLG 716
            ++P +  P  GV S D +I     +  RI+                   + +    P     P++ +  GG F   SA    Y + C  F   +  +VVSV Y   P+   P  Y+D W AL WV S       +P++    D   +V + G S+GGNIAH +A R    G   VK+ G I+++  FGGT   E                D  W    P +A    P   P   +  RLG
Sbjct:   52 RVPANARPLEGVSSFDHIIDQSVGLEVRIYRAAAEGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMS-------QPFMRSGGDAQARVFLSGDSSGGNIAHHVAVRAADEG---VKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDADRDHPACNPFGPNGRRLG 281          
The following BLAST results are available for this feature:
BLAST of EY688566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GI1L3_ARATH3.643e-2027.84Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L1_ARATH2.361e-1931.02Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GI1L2_ARATH4.453e-1833.88Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GID1_ORYSJ3.770e-1727.50Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-089-F04-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688566 ID=EY688566; Name=EY688566; organism=Citrus sinensis; type=EST; length=858bp
CAATTAAAAACATGGCATCACGCTACTCGGAAATTGCAAAAGAATTCCGA
TTCTTCCGGGTTTACAAAGACGGCCGGGTTGAGTTATTCGGACCCGACTG
CGAAAAGATCCCACCCTCCGATGACCCCACCACCGGCGTCCGATCCAAAG
ACGTTGTTATTTCGTCCGAACCACCCGTGTTTGCTCGTATCTTCATTCCG
TATGAAGCCCAAAACCCTAACCAGAATAAGCTCCCTCTCTTATTCTACGT
GCGTGGCGGCGGATTCTGCGGGCAGTCCGCCTTTGGTCCGCGGTATCATA
ATTTCTGTAGCGTCTTTTCTGCACAAGCTAATGCTATAGTGGTGTCCGTG
GAATATGGGAATTTCCCGGATCGACCCATACCCGCTTGTTACGAAGACTC
GTGGGCTGCACTCAACTGGGTGGCGTCCCATGCTGGCGGAAATGGACCCG
AGCCATGGTTGAATGATCACGCTGATTTTGGGAAAGTTTTGATTGGAGGA
GCCAGCGCTGGAGGGAATATTGCACACACTCTGGCGTTTCGGGTCGGGTC
AATCGGGTTACCTTGTGTAAAGTTGGTTGGGGTGATCATGGTGCATCCAT
TTTTTGGTGGCACTAGTCCTGAAGAAGATGCGACGTGGTTGTATATGTGT
CCAACAAACGCAGGGTTGCAGGATCCTCGGCTGAAACCGCCCGCAGAGGA
TCTGGGCAGGCTTGGCTGTGAGAAGGTTTTGATATTTGTGGCTGAAAAAA
ATTTTTTGAAACCTGTGGCTATGAATTACTACAAAAAACTTGAAAAAAAG
TGGGGGGGAAAGGAAGGGGGGACCTTTTTTAGAAATCCCGGGGAAAGGGC
ATAACCTT
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