EY688564

Overview
NameEY688564
Unique NameEY688564
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY688564_ssr19 microsatellite EY688564_ssr19:19..30. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9009 contig Csv1_Contig9009:1..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY688564 vs. ExPASy Swiss-Prot
Match: RHA1B_ARATH (RING-H2 zinc finger protein RHA1b OS=Arabidopsis thaliana GN=RHA1B PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.543e-23
Identity = 60/164 (36.59%), Postives = 93/164 (56.71%), Query Frame = 2
Query:  116 MGFPVGYTEVFLPKFFVHTLSFLGFIRNIIICLFRYLGLSDFLETDVIWPDNSPTRIPENAPVSARLIREILPVIKFQDLEMVNGDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPW-MDHDQKTCPLCRTPFVPDEMQEEFNQRLWAASGVDDLFSED 604
            MG P  + E+ +P + + TL  +GF R+++  L  Y+GL  FL+ +     + PTR+  +   SA L  E++PV++F DL     DP + C VCL +F   ++IR L  C H+FH  CLD W +D ++ TCP+CR  F+P+E    F+   W   G  D F ++
Sbjct:    1 MGLPTDFKELQIPGYVLKTLYVIGFFRDMVDALCPYIGLPSFLDHNET-SRSDPTRLALST--SATLANELIPVVRFSDLLT---DPEDCCTVCLSDFVSDDKIRQLPKCGHVFHHRCLDRWIVDCNKITCPICRNRFLPEEKSTPFD---W---GTSDWFRDE 152          
BLAST of EY688564 vs. ExPASy Swiss-Prot
Match: RHA1A_ARATH (RING-H2 zinc finger protein RHA1a OS=Arabidopsis thaliana GN=RHA1A PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.846e-22
Identity = 58/165 (35.15%), Postives = 93/165 (56.36%), Query Frame = 2
Query:  116 MGFPVGY-TEVFLPKFFVHTLSFLGFIRNIIICLFRYLGLSDFLETDVIWPDNSPTRIPENAPVSARLIREILPVIKFQDLEMVNGDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPW-MDHDQKTCPLCRTPFVPDEMQEEFNQRLWAASGVDDLFSED 604
            MG P  + TE+ +P + +  L  +GF R+I+  L  Y+GL  FL+ +     ++P         SA L  E++PV++F DL     DP + C VCL +FE  +++R L  C H+FH  CLD W +D+++  CP+CR  F+P   +E++ Q  W +    D FS++
Sbjct:    1 MGLPEDFITELQIPSYILKILYVIGFFRDIVDALCPYIGLPRFLDHN---ETSAPDLTRHALSTSASLANELIPVVRFSDLPT---DPEDCCTVCLSDFESDDKVRQLPKCGHVFHHYCLDRWIVDYNKMKCPVCRHRFLP---KEKYTQSDWGSG--SDWFSDE 154          
BLAST of EY688564 vs. ExPASy Swiss-Prot
Match: YOF7_SCHPO (Uncharacterized RING finger protein P4H10.07 OS=Schizosaccharomyces pombe GN=SPBP4H10.07 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.054e-11
Identity = 32/68 (47.06%), Postives = 38/68 (55.88%), Query Frame = 2
Query:  332 PVIKFQDLEMVNGDPP-----ENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRT 520
            PV   +DLE   G  P     E C VCL  FE  +E R L+ C H FHR C+D W+   Q +CPLCRT
Sbjct:  502 PVASQKDLEKAGGVFPFSGTDERCLVCLSNFELNDECRRLKQCNHFFHRECIDQWLTSSQNSCPLCRT 569          
BLAST of EY688564 vs. ExPASy Swiss-Prot
Match: RN167_RAT (E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.989e-11
Identity = 36/86 (41.86%), Postives = 50/86 (58.14%), Query Frame = 2
Query:  311 RLIREILPVIKFQDLEMVNGDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPF---VPDEMQEEFNQ 559
            RL +E L  I   D +   GD  + CA+CL E+E G+++R L  C H +H  C+DPW+   +KTCP+C+ P      DE QEE  Q
Sbjct:  207 RLTKEQLKQIPTHDYQ--KGDEYDVCAICLDEYEDGDKLRILP-CAHAYHSRCVDPWLTQTRKTCPICKQPVHRGPGDEEQEEETQ 289          
BLAST of EY688564 vs. ExPASy Swiss-Prot
Match: RN167_MOUSE (E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.989e-11
Identity = 36/86 (41.86%), Postives = 50/86 (58.14%), Query Frame = 2
Query:  311 RLIREILPVIKFQDLEMVNGDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPF---VPDEMQEEFNQ 559
            RL +E L  I   D +   GD  + CA+CL E+E G+++R L  C H +H  C+DPW+   +KTCP+C+ P      DE QEE  Q
Sbjct:  207 RLTKEQLKQIPTHDYQ--KGDEYDVCAICLDEYEDGDKLRVLP-CAHAYHSRCVDPWLTQTRKTCPICKQPVHRGPGDEEQEEETQ 289          
BLAST of EY688564 vs. ExPASy Swiss-Prot
Match: RN167_HUMAN (E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens GN=RNF167 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.210e-11
Identity = 36/86 (41.86%), Postives = 50/86 (58.14%), Query Frame = 2
Query:  311 RLIREILPVIKFQDLEMVNGDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPF---VPDEMQEEFNQ 559
            RL +E L  I   D +   GD  + CA+CL E+E G+++R L  C H +H  C+DPW+   +KTCP+C+ P      DE QEE  Q
Sbjct:  207 RLTKEQLKQIPTHDYQ--KGDQYDVCAICLDEYEDGDKLRVLP-CAHAYHSRCVDPWLTQTRKTCPICKQPVHRGPGDEDQEEETQ 289          
The following BLAST results are available for this feature:
BLAST of EY688564 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RHA1B_ARATH4.543e-2336.59RING-H2 zinc finger protein RHA1b OS=Arabidopsis t... [more]
RHA1A_ARATH3.846e-2235.15RING-H2 zinc finger protein RHA1a OS=Arabidopsis t... [more]
YOF7_SCHPO3.054e-1147.06Uncharacterized RING finger protein P4H10.07 OS=Sc... [more]
RN167_RAT3.989e-1141.86E3 ubiquitin-protein ligase RNF167 OS=Rattus norve... [more]
RN167_MOUSE3.989e-1141.86E3 ubiquitin-protein ligase RNF167 OS=Mus musculus... [more]
RN167_HUMAN5.210e-1141.86E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-089-E12-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688564 ID=EY688564; Name=EY688564; organism=Citrus sinensis; type=EST; length=851bp
CCACGCGTCCGGCTTCCGCTCTCTCTCTCTCCCATTCTCTTTATAAGGCT
TTGTAATCCAAGCTCTCCATTTGGGATTTGAGAACAAGATTTTTCTCTTT
TGCTTTACGTGATCCATGGGTTTCCCAGTCGGGTACACAGAAGTATTCTT
GCCGAAGTTCTTCGTACACACGCTTTCCTTTCTGGGTTTCATCAGGAACA
TCATTATCTGCTTGTTTCGCTATCTGGGACTATCTGATTTTCTTGAAACA
GACGTCATTTGGCCCGACAACTCTCCGACCCGAATACCCGAAAACGCGCC
TGTATCCGCTCGCCTGATCCGAGAAATCCTGCCAGTGATCAAGTTCCAGG
ACCTGGAGATGGTCAACGGAGACCCGCCCGAGAATTGTGCGGTTTGTTTG
TACGAGTTTGAAGGCGGAGAAGAGATCAGGTGGTTGAGGAACTGCAAGCA
CATTTTTCACAGGGCGTGCCTGGACCCTTGGATGGACCATGATCAGAAGA
CGTGTCCGCTTTGTAGGACACCCTTTGTGCCCGACGAGATGCAGGAGGAG
TTTAATCAACGGCTCTGGGCTGCTTCCGGTGTTGATGATCTTTTCAGTGA
GGACAGCTCGGATCCGGAGTTGCAGAAATCTTTGTACGGTTAGAATTGAT
GAGATACCTACTTTAGGTTCGAAGAATTTTCGGTGGACGTGCTGGTAAAC
AGGAAAATTAGCGACGTACTAGTAAAACAATTTTAACAAATAACTGTAAG
TATCTTACTTTCCTTTTAAAAAAAAAAAAAACAGGGTTTCCCCGGTCAAA
AAGGAACAAAGGTTTAGCTCCCTCTTTGGGTGCCCACTTTTAAGCTTTTT
T
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