EY688558

Overview
NameEY688558
Unique NameEY688558
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7547 contig Csv1_Contig7547:415..987. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY688558 vs. ExPASy Swiss-Prot
Match: AGD11_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD11 OS=Arabidopsis thaliana GN=AGD11 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.209e-22
Identity = 57/125 (45.60%), Postives = 79/125 (63.20%), Query Frame = 1
Query:    1 KQKLKTRLLKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSPDDKMGDAEFYITPFLEALK-MRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVEIQLEWIDI 372
            +Q +KTR++KNN+NP WNE L LSI +   P+K+ VYDKDTFS DD MG+AE  I P + A K      +     +     S+EN L  +  I+  DGK+ Q++ LRL+NVE G +EIQLE + +
Sbjct:  259 QQSVKTRVIKNNLNPVWNETLMLSIPEPMPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVSAAKAYETSSIKEPMQLGSWVASKENTLVSDGIILLEDGKVKQDISLRLQNVERGVLEIQLECLPL 383          
BLAST of EY688558 vs. ExPASy Swiss-Prot
Match: AGD13_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD13 OS=Arabidopsis thaliana GN=AGD13 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.761e-20
Identity = 51/125 (40.80%), Postives = 81/125 (64.80%), Query Frame = 1
Query:    1 KQKLKTRLLKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSPDDKMGDAEFYITPFL-EALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVEIQLEWIDI 372
            KQKL+T ++ +N+NP WN++L LS+ +S  P+KL VYD DTFS DD MG+A+  I P +  A+      +     + K   S +N L ++S I   DGK+ Q + ++L+NVE GE+E+++EW+ +
Sbjct:  210 KQKLQTTVMNSNLNPVWNQELMLSVPESYGPVKLQVYDYDTFSADDIMGEADIDIQPLITSAMAFGDPEMFGDMQIGKWLKSHDNPLIDDSIINIVDGKVKQEVQIKLQNVESGELELEMEWLPL 334          
BLAST of EY688558 vs. ExPASy Swiss-Prot
Match: AGD12_ARATH (ADP-ribosylation factor GTPase-activating protein AGD12 OS=Arabidopsis thaliana GN=AGD12 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.663e-19
Identity = 49/125 (39.20%), Postives = 79/125 (63.20%), Query Frame = 1
Query:    1 KQKLKTRLLKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSPDDKMGDAEFYITPFL-EALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVEIQLEWIDI 372
            +QK ++ ++K+N+NP WNE+L LS+  +   +KL V+D DTFS DD MG+AE  I P +  A+      +     + K   S +N L E+S I   DGK+ Q + ++L+NVE GE+E+++EW+ +
Sbjct:  211 QQKAQSTVVKSNLNPVWNEELMLSVPHNYGSVKLQVFDYDTFSADDIMGEAEIDIQPLITSAMAFGDPEMFGDMQIGKWLKSHDNALIEDSIINIADGKVKQEVQIKLQNVESGELELEMEWLPL 335          
The following BLAST results are available for this feature:
BLAST of EY688558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
AGD11_ARATH3.209e-2245.60Probable ADP-ribosylation factor GTPase-activating... [more]
AGD13_ARATH1.761e-2040.80Probable ADP-ribosylation factor GTPase-activating... [more]
AGD12_ARATH9.663e-1939.20ADP-ribosylation factor GTPase-activating protein ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-089-E03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688558 ID=EY688558; Name=EY688558; organism=Citrus sinensis; type=EST; length=573bp
AAACAGAAGTTGAAGACTCGCCTTTTGAAGAACAATGTCAATCCTGAGTG
GAATGAAGATTTAACCCTCTCTATTTCAGACTCTAATCTTCCAATCAAGC
TTACAGTTTATGACAAAGACACATTCAGTCCAGATGACAAAATGGGAGAT
GCAGAATTTTACATCACTCCATTTTTGGAAGCTCTAAAGATGCGATTGGA
AGGCCTCCCAAATGGAACCATTGTCACGAAAATACAGCCAAGCAGGGAGA
ACTGCCTTGCTGAAGAGAGCCACATTGTCTGGACTGATGGTAAGCTTGTT
CAAAACTTGTTTCTAAGACTTCGAAATGTTGAGGTGGGTGAAGTTGAAAT
CCAATTAGAGTGGATTGACATACCTGGTTCCAGGGGCCTGTAGATGACAT
CTACGCACTCTCAGCTGCTAATAAGCATAGTGTACAAAAAAGTCTCTGAG
CATCATTAACGGGCTCAGTTGGAGTTTCTTCAATCAGTTCCTCTTATTCA
CATAAATATCTTGCTGCTTACCTTTTGACTGGATTTTAATTATTAATGCT
GTGCAAATAAAAAAAAAAAAAAA
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