EY688557

Overview
NameEY688557
Unique NameEY688557
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1802 contig Csv1_Contig1802:94..811. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY688557 vs. ExPASy Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.684e-30
Identity = 74/132 (56.06%), Postives = 88/132 (66.67%), Query Frame = 3
Query:   57 MKGGRSKADAVGTDSKLKSKGARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVN 452
            MKGG+SKA +   D+KL  K  +A                    SAFFVFME+FRK +KE HPNNKSVA VGKA G+KWK ++  EKAPF+ KAEKRK +Y KN+Q YNK+ A G  AAEE ESDKS+SEVN
Sbjct:    1 MKGGKSKAKS---DNKLAVK-KQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAG--AAEEEESDKSRSEVN 126          
BLAST of EY688557 vs. ExPASy Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.200e-30
Identity = 70/136 (51.47%), Postives = 86/136 (63.24%), Query Frame = 3
Query:   57 MKGGRSKADAVGTDSKL----KSKGARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVN 452
            MKGG+SK ++   D KL    K    +A K                  SAFFVFMEEFRK F + HP NK+V+ VGKAAG KWK+MSD EKAP+V K+EKRK +Y KNM+ YNK+ A+G    +E ES+KS SEVN
Sbjct:    1 MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGPTGGDEEESEKSVSEVN 136          
BLAST of EY688557 vs. ExPASy Swiss-Prot
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.973e-27
Identity = 67/137 (48.91%), Postives = 89/137 (64.96%), Query Frame = 3
Query:   57 MKGGRSKADAVGTDSKL--KSKGARA---GKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVN 452
            MKGG+SK ++   ++KL    KGA A   GK+                 SAFFVFM +FR+Q+K+ HPNNKSVA VGKA GE+WKS+S++EKAP+V++A K+K +Y   +Q YNK+L       +E  SDKSKSEVN
Sbjct:    1 MKGGKSKGESKKAETKLAVNKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKKLE---GKDDEEGSDKSKSEVN 134          
BLAST of EY688557 vs. ExPASy Swiss-Prot
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.651e-27
Identity = 71/142 (50.00%), Postives = 86/142 (60.56%), Query Frame = 3
Query:   57 MKGGRSKADAVGTDSKL--KSKGARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQLADGVNAA--------EENESDKSKSEVN 452
            MKG +SK  A   D+KL  KSKGA    +                 SAFFVFMEEFRK+FKE +P NKSVA VGKAAG++WKS+S+ +KAP+V KA K K +YNK +  YNK  +     A        +E ESDKSKSEVN
Sbjct:    1 MKGAKSKG-AAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAKKAPAKEEEEEDEEESDKSKSEVN 141          
BLAST of EY688557 vs. ExPASy Swiss-Prot
Match: HMGL_WHEAT (HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.747e-25
Identity = 70/146 (47.95%), Postives = 86/146 (58.90%), Query Frame = 3
Query:   57 MKGGRSKADAVGTDSKL--KSKGA-RAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYN-----------KQLADGVNAAEENESDKSKSEVN 452
            MKG +SK  A   D+KL  KSKGA +   +                 SAFFVFM EFR++FK+ +P NKSVA VGKAAGE+WKS+S+ EKAP+V KA K K +YNK +  YN           K  A  V   +E ESDKSKSE+N
Sbjct:    1 MKGAKSKG-AAKADAKLAVKSKGAEKPAAKGKKGKAGKDPNKPKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYNKGESAAAAAPKKAAAKEVEEEDEEESDKSKSEIN 145          
BLAST of EY688557 vs. ExPASy Swiss-Prot
Match: HMGB3_BOVIN (High mobility group protein B3 OS=Bos taurus GN=HMGB3 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.609e-12
Identity = 48/136 (35.29%), Postives = 67/136 (49.26%), Query Frame = 3
Query:   72 SKADAVGTDSKLKSKG-ARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDY-NKQLADGVNAA---------EENESDKSKSE 446
            +KAD V  D ++K  G A+ GK+                 S FF+F  EFR + K A+P   S+  V K  GE W ++SD EK P++ KA K K  Y K++ DY +K   DG   A         EE+E D+ + E
Sbjct:   64 AKADKVRYDREMKDYGPAKGGKKKKDPNAPKRPP------SGFFLFCSEFRPKIKSANPGI-SIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADYKSKGKFDGAKGAAKVARKKVEEEDEEDEEEEE 192          
BLAST of EY688557 vs. ExPASy Swiss-Prot
Match: HMGB3_MOUSE (High mobility group protein B3 OS=Mus musculus GN=Hmgb3 PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 49/149 (32.89%), Postives = 70/149 (46.98%), Query Frame = 3
Query:   30 KTLTSPGFIMKGGRSKADAVGTDSKLKSKG-ARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDY-NKQLADGVNA--------AEENESDKSKSE 446
            KT++S         +KAD V  D ++K  G A+ GK+                 S FF+F  EFR + K  +P   S+  V K  GE W ++SD+EK P+V KA K K  Y K++ DY +K   DG            EE E ++ + E
Sbjct:   50 KTMSSKEKSKFDEMAKADKVRYDREMKDYGPAKGGKKKKDPNAPKRPP------SGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDNEKQPYVTKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVARKKVEEEEEEEEEEE 191          
BLAST of EY688557 vs. ExPASy Swiss-Prot
Match: HMGB3_CHICK (High mobility group protein B3 OS=Gallus gallus GN=HMGB3 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 48/141 (34.04%), Postives = 66/141 (46.81%), Query Frame = 3
Query:   30 KTLTSPGFIMKGGRSKADAVGTDSKLKSKG-ARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDY-NKQLADGVNAAEENESDKSKSE 446
            KT++S         +KAD V  D ++K  G A+ GK+                 SAFF+F  EFR + K  +P   S+  V K  GE W ++SD EK P+  KA K K  Y K++ DY +K   DG   A    + K   E
Sbjct:   50 KTMSSKEKAKFDEMAKADKVRYDREMKDYGPAKGGKKKKDPNAPKRPP------SAFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADYKSKGKFDGAKGAATKAARKKVEE 183          
The following BLAST results are available for this feature:
BLAST of EY688557 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
HMGL_IPONI1.684e-3056.06HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1[more]
HMGL_SOYBN2.200e-3051.47HMG1/2-like protein OS=Glycine max PE=2 SV=1[more]
HMGL_VICFA2.973e-2748.91HMG1/2-like protein OS=Vicia faba PE=2 SV=1[more]
MNB1B_MAIZE8.651e-2750.00DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=... [more]
HMGL_WHEAT4.747e-2547.95HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1[more]
HMGB3_BOVIN4.609e-1235.29High mobility group protein B3 OS=Bos taurus GN=HM... [more]
HMGB3_MOUSE6.655e-1132.89High mobility group protein B3 OS=Mus musculus GN=... [more]
HMGB3_CHICK6.655e-1134.04High mobility group protein B3 OS=Gallus gallus GN... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-089-E02-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688557 ID=EY688557; Name=EY688557; organism=Citrus sinensis; type=EST; length=718bp
CACAAACAAAGCATATCCTTCCCTTTTCCAAAACCCTAACCTCACCAGGA
TTCATCATGAAAGGAGGCAGATCGAAAGCTGACGCGGTAGGAACTGATAG
CAAGCTGAAGAGCAAAGGGGCGAGAGCCGGCAAGCGAACAGCGAAGCCCA
AGGCTGCGAAAGATCCAAACAAGCCGAAGAGGCCTCCTAGTGCTTTCTTC
GTTTTCATGGAGGAGTTCAGGAAGCAGTTCAAAGAAGCTCATCCTAACAA
TAAATCTGTTGCTACTGTTGGCAAAGCTGCTGGAGAAAAATGGAAGTCAA
TGTCAGATGATGAGAAAGCGCCATTTGTTGAAAAGGCTGAGAAAAGAAAG
TCTGATTACAACAAGAACATGCAGGATTACAACAAGCAGTTGGCTGATGG
AGTAAATGCTGCTGAGGAAAATGAATCTGACAAGTCCAAGTCTGAAGTGA
ATGATGAGGATGATGAAGAAGGCAGTGGAGAGGAGGAAGATGATGATTAG
AGAATGGCAGCGAAGGATTCAAAAAGTTGAAGTTTTAGCAATCTAGTAGA
ATTGCTTATAACATGATAACCCTTAGCCTTTTAGATTAGATTAGGAAAGA
AATCAAGTGTTGTTCAGGATTTACTGAAGCACCATATCGATGGATACGTA
CCTAAATGTTCTCTTAAGTCTTTAATCATCTAGTTTCAACATTTATATGT
ATTAAAAAAAAAAAAAAA
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