EY688517

Overview
NameEY688517
Unique NameEY688517
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4331 contig Csv1_Contig4331:391..1263. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY688517 vs. ExPASy Swiss-Prot
Match: PHSL1_SOLTU (Alpha-1,4 glucan phosphorylase L-1 isozyme, chloroplastic/amyloplastic OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.922e-24
Identity = 51/72 (70.83%), Postives = 60/72 (83.33%), Query Frame = 2
Query:    2 GNEEVGQADYFLVGEDFPIYLECREKVDEAYCDQKRWTTMSIMNTAGSSKFGIDRTIQEDGRDVWNVIPVEL 217
            GNE  G+ADYFLVG+DFP Y+EC+EKVDEAY DQKRWTTMSI+NTAGS KF  DRTI E  +D+WN+  VE+
Sbjct:  894 GNEGFGRADYFLVGKDFPSYIECQEKVDEAYRDQKRWTTMSILNTAGSYKFSSDRTIHEYAKDIWNIEAVEI 965          
BLAST of EY688517 vs. ExPASy Swiss-Prot
Match: PHSL2_SOLTU (Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic OS=Solanum tuberosum GN=STP-1 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.278e-24
Identity = 50/73 (68.49%), Postives = 60/73 (82.19%), Query Frame = 2
Query:    2 GNEEVGQADYFLVGEDFPIYLECREKVDEAYCDQKRWTTMSIMNTAGSSKFGIDRTIQEDGRDVWNVIPVELP 220
            GNE  G+ADYFLVG+DFP Y+EC++KVDEAY DQK+WT MSI+NTAGS KF  DRTI +  RD+W + PVELP
Sbjct:  902 GNEGYGRADYFLVGKDFPDYIECQDKVDEAYRDQKKWTKMSILNTAGSFKFSSDRTIHQYARDIWRIEPVELP 974          
BLAST of EY688517 vs. ExPASy Swiss-Prot
Match: PHSL_VICFA (Alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic OS=Vicia faba GN=PHO1 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 4.281e-24
Identity = 50/72 (69.44%), Postives = 61/72 (84.72%), Query Frame = 2
Query:    2 GNEEVGQADYFLVGEDFPIYLECREKVDEAYCDQKRWTTMSIMNTAGSSKFGIDRTIQEDGRDVWNVIPVEL 217
            GNE  G+ADYFLVG+DFP YLEC+E+VD+AY DQK+WT MSI+NTAGSSKF  DRTI E  R++WN+ PV+L
Sbjct:  931 GNEGFGRADYFLVGQDFPSYLECQEEVDKAYRDQKKWTRMSILNTAGSSKFSSDRTIHEYAREIWNIEPVKL 1002          
BLAST of EY688517 vs. ExPASy Swiss-Prot
Match: PHSL_IPOBA (Alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic OS=Ipomoea batatas PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.734e-23
Identity = 49/73 (67.12%), Postives = 57/73 (78.08%), Query Frame = 2
Query:    2 GNEEVGQADYFLVGEDFPIYLECREKVDEAYCDQKRWTTMSIMNTAGSSKFGIDRTIQEDGRDVWNVIPVELP 220
            GNE  G+ DYFLVG+DFP Y+EC+EKVDEAY DQK WT MSI+NTAGS KF  DRTI E  +D+WN+ PV  P
Sbjct:  883 GNEGFGRGDYFLVGKDFPSYIECQEKVDEAYRDQKIWTRMSILNTAGSYKFSSDRTIHEYAKDIWNIQPVVFP 955          
BLAST of EY688517 vs. ExPASy Swiss-Prot
Match: PHSH_VICFA (Alpha-glucan phosphorylase, H isozyme OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.585e-18
Identity = 40/73 (54.79%), Postives = 53/73 (72.60%), Query Frame = 2
Query:    2 GNEEVGQADYFLVGEDFPIYLECREKVDEAYCDQKRWTTMSIMNTAGSSKFGIDRTIQEDGRDVWNVIPVELP 220
            GN   G+ DYFLVG DFP Y++ +EKVDEAY D+KRW  MSI++TAGS KF  DRTI +  +++WN+    +P
Sbjct:  770 GNSGYGRGDYFLVGYDFPSYMDAQEKVDEAYRDKKRWLKMSILSTAGSGKFSSDRTIAQYAKEIWNIEECRVP 842          
BLAST of EY688517 vs. ExPASy Swiss-Prot
Match: PHSH_SOLTU (Alpha-glucan phosphorylase, H isozyme OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.972e-17
Identity = 37/73 (50.68%), Postives = 52/73 (71.23%), Query Frame = 2
Query:    2 GNEEVGQADYFLVGEDFPIYLECREKVDEAYCDQKRWTTMSIMNTAGSSKFGIDRTIQEDGRDVWNVIPVELP 220
            GN   G+ DYFLVG DFP Y++ + +VDEAY D+KRW  MSI++T+GS KF  DRTI +  +++WN+    +P
Sbjct:  766 GNSGYGRGDYFLVGHDFPSYMDAQARVDEAYKDRKRWIKMSILSTSGSGKFSSDRTISQYAKEIWNIAECRVP 838          
BLAST of EY688517 vs. ExPASy Swiss-Prot
Match: PHSH_WHEAT (Alpha-glucan phosphorylase, H isozyme OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.129e-16
Identity = 37/73 (50.68%), Postives = 51/73 (69.86%), Query Frame = 2
Query:    2 GNEEVGQADYFLVGEDFPIYLECREKVDEAYCDQKRWTTMSIMNTAGSSKFGIDRTIQEDGRDVWNVIPVELP 220
            GN   G+ DYFLVG DFP Y++ + +VDEAY D+K+W  MSI+NTAGS KF  DRTI +  +++W +    +P
Sbjct:  760 GNTGFGRGDYFLVGYDFPSYIDAQARVDEAYKDKKKWVKMSILNTAGSGKFSSDRTIDQYAKEIWGISACPVP 832          
BLAST of EY688517 vs. ExPASy Swiss-Prot
Match: PHSH_ARATH (Alpha-glucan phosphorylase, H isozyme OS=Arabidopsis thaliana GN=At3g46970 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.516e-16
Identity = 38/73 (52.05%), Postives = 51/73 (69.86%), Query Frame = 2
Query:    2 GNEEVGQADYFLVGEDFPIYLECREKVDEAYCDQKRWTTMSIMNTAGSSKFGIDRTIQEDGRDVWNVIPVELP 220
            GN   G+ DYFLVG DFP Y++ + KVDEAY D+K W  MSI++TAGS KF  DRTI +  +++WN+    +P
Sbjct:  769 GNTGFGRGDYFLVGYDFPSYMDAQAKVDEAYKDRKGWLKMSILSTAGSGKFSSDRTIAQYAKEIWNIEACPVP 841          
BLAST of EY688517 vs. ExPASy Swiss-Prot
Match: PYGL_RAT (Glycogen phosphorylase, liver form OS=Rattus norvegicus GN=Pygl PE=1 SV=5)

HSP 1 Score: 68.9366 bits (167), Expect = 4.156e-11
Identity = 30/64 (46.88%), Postives = 42/64 (65.62%), Query Frame = 2
Query:   26 DYFLVGEDFPIYLECREKVDEAYCDQKRWTTMSIMNTAGSSKFGIDRTIQEDGRDVWNVIPVEL 217
            D F V  D+  Y++C+EKV + Y +QK W TM + N A S KF  DRTI+E  +D+WN+ P +L
Sbjct:  770 DRFKVFADYEAYVKCQEKVSQLYMNQKAWNTMVLRNIAASGKFSSDRTIREYAKDIWNMEPSDL 833          
BLAST of EY688517 vs. ExPASy Swiss-Prot
Match: PYGL_MOUSE (Glycogen phosphorylase, liver form OS=Mus musculus GN=Pygl PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 4.156e-11
Identity = 30/64 (46.88%), Postives = 42/64 (65.62%), Query Frame = 2
Query:   26 DYFLVGEDFPIYLECREKVDEAYCDQKRWTTMSIMNTAGSSKFGIDRTIQEDGRDVWNVIPVEL 217
            D F V  D+  Y++C+EKV + Y +QK W TM + N A S KF  DRTI+E  +D+WN+ P +L
Sbjct:  770 DRFKVFADYEAYVKCQEKVSQLYMNQKAWNTMVLKNIAASGKFSSDRTIKEYAKDIWNMEPSDL 833          
The following BLAST results are available for this feature:
BLAST of EY688517 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
PHSL1_SOLTU1.922e-2470.83Alpha-1,4 glucan phosphorylase L-1 isozyme, chloro... [more]
PHSL2_SOLTU3.278e-2468.49Alpha-1,4 glucan phosphorylase L-2 isozyme, chloro... [more]
PHSL_VICFA4.281e-2469.44Alpha-1,4 glucan phosphorylase L isozyme, chloropl... [more]
PHSL_IPOBA4.734e-2367.12Alpha-1,4 glucan phosphorylase L isozyme, chloropl... [more]
PHSH_VICFA4.585e-1854.79Alpha-glucan phosphorylase, H isozyme OS=Vicia fab... [more]
PHSH_SOLTU2.972e-1750.68Alpha-glucan phosphorylase, H isozyme OS=Solanum t... [more]
PHSH_WHEAT1.129e-1650.68Alpha-glucan phosphorylase, H isozyme OS=Triticum ... [more]
PHSH_ARATH2.516e-1652.05Alpha-glucan phosphorylase, H isozyme OS=Arabidops... [more]
PYGL_RAT4.156e-1146.88Glycogen phosphorylase, liver form OS=Rattus norve... [more]
PYGL_MOUSE4.156e-1146.88Glycogen phosphorylase, liver form OS=Mus musculus... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-072-H03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688517 ID=EY688517; Name=EY688517; organism=Citrus sinensis; type=EST; length=873bp
AGGAAATGAAGAGGTTGGCCAGGCAGATTATTTCCTCGTGGGCGAAGATT
TCCCTATTTACTTGGAATGCCGGGAGAAGGTTGATGAAGCATATTGCGAT
CAAAAGAGATGGACGACAATGTCTATCATGAACACAGCGGGTTCATCCAA
GTTCGGCATCGACAGAACGATTCAGGAAGATGGCCGAGACGTATGGAACG
TAATACCCGTCGAATTGCCGTGGCTGTGTAATGGTTGTTCCTAGGACTTG
AGTTGGGACTACCGCGGGCTTTTCTGATCACTTATGGCATCCTGTTGATA
TATGTTCGATGTAAAGCAAAATGCTTATGATCCCTGGATGAAAGCCGTGA
ATAAATGTATCTTCGATGAATATAATTACTGTATTACGTAATTAAGAGAG
TAGGATAAATAAGAACTGAAAATCTTGTTTCACCACCTTTCTAAAAAAGT
AGTGCGCTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACGCAAA
AAAAAAAAAAGAAGAGACAAAACACAAAATAAATGCCAAACGATACAAGA
AAAGAATCGCCATAGTGAAGACGATAAACAACCACCGTGGCCCCCGCCAA
CCAGCGGCATTTGGCTCCCTCTGCCGGTGGGGGAGGGGGGGGGGGCCCCC
TAGAAAGGAACAAAATTTGAAACCGGGGGGGGGGGCCATTCTCACTCTTT
TTTGGGGGCCCCCCATTTTCCTACCCCGGGGGCGCCTTTTAAACGGCGCG
GGGAGGAGGAAAACCCCGGGGGGGCCCCCATAATTGTCCCCCGGCGTCGG
GCCACCCCCCCTCTCCCCCCGGGGGGGGAAAAGAGAAAGGGGCGCCCCCC
CCCGCCCCCCCCTCCGAAAGGGG
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