EY688442

Overview
NameEY688442
Unique NameEY688442
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY688442 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 1.165e-71
Identity = 123/163 (75.46%), Postives = 140/163 (85.89%), Query Frame = 3
Query:   36 ISSATVATANRATLAQARPVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQ 524
            ISS+ +AT NR T  QA   APFTGLKS+ AFP TKK NND +S+ SNGGRVQCMKVWPP GLKK+ETLSYLPPLSDEAL KEI+YLIR+ WIPCLEFELE G+VYREHH SPGYYDGRYWTMWKLPM+GCTD+ QV+ EVGE +KEYP++F+R+I FDN RQ
Sbjct:    4 ISSSAIATVNRTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQ 166          
BLAST of EY688442 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 1.165e-71
Identity = 129/168 (76.79%), Postives = 146/168 (86.90%), Query Frame = 3
Query:   21 MASSFISSATVATANRATLAQARPVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQ 524
            MASS ISSATVAT +RAT AQA  VAPFTGLKS++AFPAT+K+NNDITS+ASNGGRVQCMKVWPP GL+KFETLSYLPPLS E+L K+I YLI  GWIPCLEFELE  +VYRE+++SPGYYDGRYW MWKLPM+GCTDATQVL E+ E  K YP S +RII FDN+RQ
Sbjct:    1 MASSMISSATVATVSRATPAQATMVAPFTGLKSTAAFPATRKSNNDITSLASNGGRVQCMKVWPPLGLQKFETLSYLPPLSIESLAKQIEYLILKGWIPCLEFELEHPFVYRENNRSPGYYDGRYWVMWKLPMFGCTDATQVLAELQEASKTYPTSHIRIIGFDNKRQ 168          
BLAST of EY688442 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.682e-70
Identity = 128/170 (75.29%), Postives = 146/170 (85.88%), Query Frame = 3
Query:   21 MASSFISSATVAT--ANRATLAQARPVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQ 524
            MASS ISS TVAT  A+R   AQAR VAPF GLKSSSAFP T+K+N DITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E+L KE++YL+R  W+PCLEFELE G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTD++QVL E+ E +K YP SF+RII FDN RQ
Sbjct:    1 MASSMISSGTVATVSADRPAPAQARMVAPFNGLKSSSAFPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQ 169          
BLAST of EY688442 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.682e-70
Identity = 122/165 (73.94%), Postives = 141/165 (85.45%), Query Frame = 3
Query:   30 SFISSATVATANRATLAQARPVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQ 524
            + ISSA V T NRA+ AQA  VAPFTGLKSS+ FP TKKTNNDITSIASNGGRV CM+VWPP G KKFETLSYLPPL++E L KE+ YLIR GWIPCLEFELEKG+VYRE+H+SPGYYDGRYWTMW+LP++G TD++QVL E+ + + EYP SF+RII FDN RQ
Sbjct:    2 ALISSAAVTTVNRASSAQANLVAPFTGLKSSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAEYPDSFIRIIGFDNVRQ 166          
BLAST of EY688442 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 4.894e-70
Identity = 128/170 (75.29%), Postives = 146/170 (85.88%), Query Frame = 3
Query:   21 MASSFISSATVAT--ANRATLAQARPVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQ 524
            MASS ISS TVAT  A+R   AQAR VAPFTGLKSSSA P T+K+N DITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E+L KE++YL+R  W+PCLEFELE G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTD++QVL E+ E +K YP SF+RII FDN RQ
Sbjct:    1 MASSMISSGTVATVSADRPAPAQARMVAPFTGLKSSSASPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQ 169          
BLAST of EY688442 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 1.090e-69
Identity = 124/168 (73.81%), Postives = 144/168 (85.71%), Query Frame = 3
Query:   21 MASSFISSATVATANRATLAQARPVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQ 524
            MA S ISSATVA  +RA+ AQ+  VAPFT LKS+SAFP T+KTNNDITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E L KE++YL+R   IPCLEFELE G+VYREH++SPGYYDGRYWTMWKLPM+GC D++QVL E+ E +K YP +F+RII FDN+RQ
Sbjct:    1 MACSMISSATVAAVSRASPAQSSMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQ 168          
BLAST of EY688442 vs. ExPASy Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 2.056e-68
Identity = 122/169 (72.19%), Postives = 145/169 (85.80%), Query Frame = 3
Query:   21 MASSFISSATVATANRATLAQARPVAPFTGLKSSSAFPATKKTNN-DITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQ 524
            MASS +SSA VAT  R+ +AQA  VAPFTGLKS+++FP TKK NN DITS+ASNGGRV+CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YL+++GW+PCLEFE E G+VYRE+HKSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RII FDN RQ
Sbjct:    1 MASSIVSSAAVAT--RSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWIRIIGFDNVRQ 167          
BLAST of EY688442 vs. ExPASy Swiss-Prot
Match: RBS_HEVBR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 7.814e-68
Identity = 121/168 (72.02%), Postives = 138/168 (82.14%), Query Frame = 3
Query:   21 MASSFISSATVATANRATLAQARPVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQ 524
            MASS +S+A VA  NRA+ AQA  VAPFTGLKS+SAFP T+KT  DITSIASNGGRVQCM+VWPP G K +ETLSYLPPL+ E L KE+ YL+R GW+PCLEFELE G VYRE+H+SPGYYDGRYWTMWKLPM+GCTDA QVL E+ E+ K YP  + RII FDN RQ
Sbjct:    1 MASSMLSTAAVACINRASPAQASMVAPFTGLKSTSAFPTTRKTTTDITSIASNGGRVQCMQVWPPRGKKFYETLSYLPPLTREQLAKEVEYLLRKGWVPCLEFELEHGTVYREYHRSPGYYDGRYWTMWKLPMFGCTDAVQVLQELDEMIKAYPDCYGRIIGFDNVRQ 168          
BLAST of EY688442 vs. ExPASy Swiss-Prot
Match: RBS8_NICPL (Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 1.021e-67
Identity = 122/168 (72.62%), Postives = 141/168 (83.93%), Query Frame = 3
Query:   21 MASSFISSATVATANRATLAQARPVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQ 524
            MASS +SSA VAT  R+ +AQA  VAPFTGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP   KK+ETLSYLP LS E LL EI YL++SGW+PCLEFE E+G+VYREHH SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRII FDN RQ
Sbjct:    1 MASSVLSSAAVAT--RSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEIEYLLKSGWVPCLEFETERGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWVRIIGFDNVRQ 166          
BLAST of EY688442 vs. ExPASy Swiss-Prot
Match: RBS2A_SOLLC (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum lycopersicum GN=RBCS-2A PE=2 SV=2)

HSP 1 Score: 255.758 bits (652), Expect = 2.274e-67
Identity = 123/168 (73.21%), Postives = 140/168 (83.33%), Query Frame = 3
Query:   21 MASSFISSATVATANRATLAQARPVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQ 524
            MASS ISSA VAT  R+ + QA  VAPFTGLKSS+ FP TKK N DITSIASNGGRV CM+VWPP  +KK+ETLSYLP LSDE LL EI YL+++GW+PCLEFE E G+VYRE++KSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRII FDN RQ
Sbjct:    1 MASSVISSAAVAT--RSNVTQASMVAPFTGLKSSATFPVTKKQNLDITSIASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQ 166          
The following BLAST results are available for this feature:
BLAST of EY688442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
RBS_LACSA1.165e-7175.46Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_FAGCR1.165e-7176.79Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PYRPY1.682e-7075.29Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MEDSA1.682e-7073.94Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MALSP4.894e-7075.29Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_BETVE1.090e-6973.81Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_SOLTU2.056e-6872.19Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS_HEVBR7.814e-6872.02Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS8_NICPL1.021e-6772.62Ribulose bisphosphate carboxylase small chain 8B, ... [more]
RBS2A_SOLLC2.274e-6773.21Ribulose bisphosphate carboxylase small chain 2A, ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-070-G12-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688442 ID=EY688442; Name=EY688442; organism=Citrus sinensis; type=EST; length=845bp
CCCGCGTCCGGCAAGTACCAATGGCTTCCTCCTTTATCTCATCGGCCACC
GTTGCCACCGCGAACCGCGCCACCCTTGCTCAGGCCCGCCCGGTCGCCCC
CTTCACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAGAAGACCA
ACAATGACATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATG
AAGGTGTGGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCT
CCCGCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCAATTACCTTATCC
GCTCCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTG
TACCGTGAGCACCACAAGTCACCAGGATACTACGATGGACGCTACTGGAC
AATGTGGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGA
ACGAGGTTGGGGAGGTCCAAAAGGAATACCCACATTCATTCGTCCGAATT
ATCCGATTTGACAACGAGCGTCAAGGCAACGCATCAATTTCCTTGCTGCC
AAGCCACCAGCCCGTCTAGGCCCCCCAATTAAATTTGGGTAACCCACCCT
CGCATATTGGTGATAATCATAATGGCGAAACCCCCAAAAGAGAATCTCAA
TAGAGGGCCGGCGAGCGCGTGGAGACACCCCACCCCAGGCGACGCGCGCC
CCCGCCCCCACCGGCCGGGGCAACCAGGGACAACGCCCCGAGCACAACAC
GACAACACCGCGCCACAACACAGGAGGGGAGAGCGAGAAGACACGCCAAC
CGACGGAACAGGAGGACAAACCTAACTGGAACAGCCAAAGACCGA
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