EY688437
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY688437 vs. ExPASy Swiss-Prot
Match: TYDP1_HUMAN (Tyrosyl-DNA phosphodiesterase 1 OS=Homo sapiens GN=TDP1 PE=1 SV=2) HSP 1 Score: 110.923 bits (276), Expect = 8.001e-30 Identity = 65/132 (49.24%), Postives = 87/132 (65.91%), Query Frame = 3 Query: 186 VLLQFSSLGSL---DEKWM-AELXXXXXXXXXEDKTPLGIGEPL-IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDK-DFLKKYWAKWKASHTGRSRAMPHIKTFARYNGQ--KLAWFLLTSANLSKAAWGAL 557 V+ QFSS+GSL + KW+ +E E KTP PL +++P+VE+VR SLEGY AG ++P + +K ++L Y+ KW A +GRS AMPHIKT+ R + K+AWFL+TSANLSKAAWGAL Sbjct: 394 VVGQFSSVGSLGADESKWLCSEFKESMLTLGKESKTPGKSSVPLYLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNWLHSYFHKWSAETSGRSNAMPHIKTYMRPSPDFSKIAWFLVTSANLSKAAWGAL 525 HSP 2 Score: 39.2762 bits (90), Expect = 8.001e-30 Identity = 18/22 (81.82%), Postives = 20/22 (90.91%), Query Frame = 1 Query: 559 QKNNSQLMIRSYELGVLILPSA 624 +KN +QLMIRSYELGVL LPSA Sbjct: 526 EKNGTQLMIRSYELGVLFLPSA 547
BLAST of EY688437 vs. ExPASy Swiss-Prot
Match: TYDP1_RAT (Tyrosyl-DNA phosphodiesterase 1 OS=Rattus norvegicus GN=Tdp1 PE=2 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.299e-29 Identity = 65/132 (49.24%), Postives = 86/132 (65.15%), Query Frame = 3 Query: 186 VLLQFSSLGSL---DEKWM-AELXXXXXXXXXEDKTPLGIGEPL-IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDKD-FLKKYWAKWKASHTGRSRAMPHIKTFARYNGQ--KLAWFLLTSANLSKAAWGAL 557 V+ QFSS+GSL + KW+ +E E +TP PL +++P+VE+VR SLEGY AG ++P + +K +L Y+ KW A +GRS AMPHIKT+ R + KLAWFL+TSANLSKAAWGAL Sbjct: 395 VVGQFSSIGSLGPDESKWLCSEFKESLLAVREEGRTPGRSAVPLHLIYPSVENVRTSLEGYPAGGSLPYGIQTAEKQRWLHPYFHKWSAETSGRSNAMPHIKTYMRPSPDFSKLAWFLVTSANLSKAAWGAL 526 HSP 2 Score: 39.2762 bits (90), Expect = 2.299e-29 Identity = 18/22 (81.82%), Postives = 20/22 (90.91%), Query Frame = 1 Query: 559 QKNNSQLMIRSYELGVLILPSA 624 +KN +QLMIRSYELGVL LPSA Sbjct: 527 EKNGAQLMIRSYELGVLFLPSA 548
BLAST of EY688437 vs. ExPASy Swiss-Prot
Match: TYDP1_MOUSE (Tyrosyl-DNA phosphodiesterase 1 OS=Mus musculus GN=Tdp1 PE=2 SV=2) HSP 1 Score: 107.457 bits (267), Expect = 8.600e-29 Identity = 63/129 (48.84%), Postives = 83/129 (64.34%), Query Frame = 3 Query: 195 QFSSLGSL---DEKWM-AELXXXXXXXXXEDKTPLGIGEPL-IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDKD-FLKKYWAKWKASHTGRSRAMPHIKTFARYNGQ--KLAWFLLTSANLSKAAWGAL 557 QFSS+GSL + KW+ +E E + P PL +++P+VE+VR SLEGY AG ++P + +K +L Y+ KW A +GRS AMPHIKT+ R + KLAWFL+TSANLSKAAWGAL Sbjct: 398 QFSSIGSLGPDESKWLCSEFKDSLLALREEGRPPGKSAVPLHLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQRWLHSYFHKWSAETSGRSNAMPHIKTYMRPSPDFSKLAWFLVTSANLSKAAWGAL 526 HSP 2 Score: 39.2762 bits (90), Expect = 8.600e-29 Identity = 18/22 (81.82%), Postives = 20/22 (90.91%), Query Frame = 1 Query: 559 QKNNSQLMIRSYELGVLILPSA 624 +KN +QLMIRSYELGVL LPSA Sbjct: 527 EKNGTQLMIRSYELGVLFLPSA 548
BLAST of EY688437 vs. ExPASy Swiss-Prot
Match: TYDP1_DROME (Probable tyrosyl-DNA phosphodiesterase OS=Drosophila melanogaster GN=gkt PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 1.055e-17 Identity = 52/131 (39.69%), Postives = 75/131 (57.25%), Query Frame = 3 Query: 180 LDVLLQFSSLGSLDEKWMAELXXXXXXXXXEDKTPLGIGEPL----IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDKD-FLKKYWAKWKASHTGRSRAMPHIKTFARYN--GQKLAWFLLTSANLSKAAWG 551 + V+ Q SS+GSL A + +D TP+G + +++P+ +V S +G G +P + DK +LK Y +WK+S RSRAMPHIK++ R+N Q + WF+LTSANLSKAAWG Sbjct: 379 IPVVCQSSSIGSLGANVQAWIQQDFVNSLKKDSTPVGKLRQMPPFKMIYPSYGNVAGSHDGMLGGGCLPYGKNTNDKQPWLKDYLQQWKSSDRFRSRAMPHIKSYTRFNLEDQSVYWFVLTSANLSKAAWG 509 HSP 2 Score: 21.1718 bits (43), Expect = 1.055e-17 Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1 Query: 577 LMIRSYELGVLILP 618 L I +YE GVL LP Sbjct: 521 LRIANYEAGVLFLP 534
BLAST of EY688437 vs. ExPASy Swiss-Prot
Match: TYDP1_CAEEL (Probable tyrosyl-DNA phosphodiesterase OS=Caenorhabditis elegans GN=F52C12.1 PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 8.655e-17 Identity = 37/83 (44.58%), Postives = 56/83 (67.47%), Query Frame = 3 Query: 306 IVWPTVEDVRCSLEGYAAGNAIPSPQK-NVDKDFLKKYWAKWKASHTGRSRAMPHIKTFARYNGQKLAWFLLTSANLSKAAWG 551 +V+P+VEDVR S +GYA G ++P + + +L+ KW+++ R+ A+PH KT+ +Y+ + W LLTSANLSKAAWG Sbjct: 302 LVFPSVEDVRTSCQGYAGGCSVPYRNSVHARQKWLQGNMCKWRSNAKRRTNAVPHCKTYVKYDKKVAIWQLLTSANLSKAAWG 384 HSP 2 Score: 28.8758 bits (63), Expect = 8.655e-17 Identity = 13/20 (65.00%), Postives = 16/20 (80.00%), Query Frame = 1 Query: 553 HSQKNNSQLMIRSYELGVLI 612 + KN QLMIRS+E+GVLI Sbjct: 389 NKSKNVEQLMIRSWEMGVLI 408
BLAST of EY688437 vs. ExPASy Swiss-Prot
Match: TYDP1_SCHPO (Probable tyrosyl-DNA phosphodiesterase OS=Schizosaccharomyces pombe GN=SPCP31B10.05 PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 1.803e-12 Identity = 48/131 (36.64%), Postives = 68/131 (51.91%), Query Frame = 3 Query: 195 QFSSLGSLDEK--WMAELXXXXXXXXXEDKTPLGIGEPLIVWPTVEDVRCSLEGYAAGNAI------PSPQKNVDKDFLKKYWAKWKASHTGRSRAMPHIKTFARYN--GQKLAWFLLTSANLSKAAWGAL 557 Q SS+GS K ++AEL D G ++PTV++V+ S+ G+ +G++I + V+ K KW A GR R PHIKT+ R++ G+ L W L+TSANLSK AWG L Sbjct: 312 QCSSMGSFGPKQEYIAELT---------DGFGCQRGNWKFLFPTVKEVQQSMLGWQSGSSIHFNILGKTAASQVETLKKGKNLCKWVAMKAGRQRVAPHIKTYMRFSNDGELLRWVLVTSANLSKPAWGTL 433 HSP 2 Score: 24.6386 bits (52), Expect = 1.803e-12 Identity = 13/24 (54.17%), Postives = 15/24 (62.50%), Query Frame = 1 Query: 553 HSQKNNSQ--LMIRSYELGVLILP 618 H K+ S L IRSYE GVL+ P Sbjct: 436 HKAKSRSTRGLRIRSYEAGVLLYP 459 The following BLAST results are available for this feature:
BLAST of EY688437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >EY688437 ID=EY688437; Name=EY688437; organism=Citrus sinensis; type=EST; length=860bpback to top |