EY688423

Overview
NameEY688423
Unique NameEY688423
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY688423_ssr198 microsatellite EY688423_ssr198:198..212. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY688423 vs. ExPASy Swiss-Prot
Match: RBM38_HUMAN (RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.260e-11
Identity = 35/93 (37.63%), Postives = 53/93 (56.99%), Query Frame = 3
Query:  342 PLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLA 620
            PL     +  + +D +  KIFV GL + TT  SL   F G G+IEE  ++ D+ TGK++G+ F+    R AA +A K+P   ++ R A+  LA
Sbjct:   17 PLAAPGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLA 109          
The following BLAST results are available for this feature:
BLAST of EY688423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RBM38_HUMAN9.260e-1137.63RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-070-E10-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688423 ID=EY688423; Name=EY688423; organism=Citrus sinensis; type=EST; length=873bp
CTCACCGAACTCGAAGTCGAGAGCAGCTGAAGTGCTGAACCCTCTGTTTT
CTCCTCAAAACCCTAGGAACGTTTTCAGCAATGGCGAAAATCAACAAAGT
TAAGAAACTAAAACAGGCAACTACGAGCCAAAAACCCAACAAAAAAATAC
TCAAAAAAGAACCCAAATCCCTCAAAAAACCCGAACCGCCTCCCGTAGCC
GCCGCCGCCGCCACCAGCAGCAGCTGCAGCTCATCGTCCGAATCGGAGTC
TGAACCGGAGTCAGAATCCATTTCAAGCCTCCTCGAACCTTACTCCAAGG
ACCAGCTCATCGACCTCATCACCGCCGCCGCCACAAAAATCCCGCTTTTG
CACGACCACATTCTCGAAACGGCCGACAGGGACGTGTCCCAGCGGAAAAT
ATTCGTTCACGGGCTCGGATGGGACACGACGCAGGAGAGTTTGTTGTCGG
CGTTCGGAGGTTCCGGAGAAATCGAGGAGTGCAAGTTGGTGATCGATAAG
GTGACCGGAAAGGCAAAAGGGTTTGCTTTTATTGTGTTCAAAACGAGGAA
AGCGGCCGTGAAAGCGTTGAAGAATCCGCAAAGGAAGGTGAATAACCGAA
TGGCGTCTTGCCAGCTGGCGTCAGTGGGCCCCACTGGTGCCGGGGGTGAA
GGAACAGGGGGCGGCGGCCCAGGGGGAAAGGGAAATTTTTGTGAGCAAGG
TGCGGAGAGAAGTTGGAACGGGACAAATCGGGGGGAGCTCTTCACAAGAA
TGGGGGACATTGAAGCCGGACAGCGGGGGCTGAGATAACGCCGAAGGAAA
CCACGCGGGATTTGGGACATAGCGGCGACAAACAAGGCCCGAGACAAACG
AGATGAGCCTAGATAAACGTGAT
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