EY688408

Overview
NameEY688408
Unique NameEY688408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY688408 vs. ExPASy Swiss-Prot
Match: 21KD_DAUCA (21 kDa protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.539e-36
Identity = 53/107 (49.53%), Postives = 80/107 (74.77%), Query Frame = 2
Query:  293 AAGIADTRFIRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSFVTKLRKFRNLKHREYEAIADCLDEMGDTVDRLSKSVQELNHMGQGQGS 613
            A+     +FI++SC  TTYPA+C QSLSAYA +IQ +P++LA TAL VSL+R Q A++F+ +L KF+ LK R+Y AI DCL+E+ D++DR+S+S  E+ ++   +G+
Sbjct:   20 ASAAPANQFIKTSCTLTTYPAVCEQSLSAYAKTIQNNPQELASTALQVSLTRTQQAQTFMKRLNKFKGLKARQYAAIHDCLEEVEDSLDRVSRSCDEMKNLSHAKGN 126          

HSP 2 Score: 57.7658 bits (138), Expect = 2.539e-36
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 3
Query:  603 AKGQDFLWDMSNVETWVNAALTDENTCTDGVGAQALEGK 719
            AKG DF + MSNVETWV+AALTDE TC DG   + ++GK
Sbjct:  123 AKGNDFTFRMSNVETWVSAALTDETTCMDGFAGKGMDGK 161          
BLAST of EY688408 vs. ExPASy Swiss-Prot
Match: PME3_PHAVU (Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=2 SV=1)

HSP 1 Score: 46.595 bits (109), Expect = 3.440e-11
Identity = 31/104 (29.81%), Postives = 48/104 (46.15%), Query Frame = 2
Query:  320 IRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSFVTKLRKFRNLKHREYEAIADCLDEMGDTVDRLSKSVQELNHMGQGQGSGLSVGH 631
            +++ C +T YP+ C  S+S+   S    P  L   +L V++    S   F +KLR       R  +AI  C    GD +DRL+ S+  L  +     S  SV +
Sbjct:   77 LKAVCDTTRYPSSCFSSISSLPESNTTDPELLFKLSLRVAIDELSS---FPSKLRANAEQDARLQKAIDVCSSVFGDALDRLNDSISALGTVAGRIASSASVSN 177          

HSP 2 Score: 40.4318 bits (93), Expect = 3.440e-11
Identity = 16/23 (69.57%), Postives = 21/23 (91.30%), Query Frame = 3
Query:  630 MSNVETWVNAALTDENTCTDGVG 698
            +SNVETW++AALTD++TC D VG
Sbjct:  175 VSNVETWLSAALTDQDTCLDAVG 197          
The following BLAST results are available for this feature:
BLAST of EY688408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
21KD_DAUCA2.539e-3649.5321 kDa protein OS=Daucus carota PE=2 SV=1[more]
PME3_PHAVU3.440e-1129.81Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-070-D02-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688408 ID=EY688408; Name=EY688408; organism=Citrus sinensis; type=EST; length=854bp
TGTGCATAAAATATCTATCATACATTGATTGACATAGATATTAGATACCA
CCGCCCTCGGTTCTCGTTCCTGTGCTTATCCTATTGGTCCATCACTCTTG
TTCGAAGTTTAAGACCAAAATTGCCCCTAAAGAGTGCTCACAAGCCCTCT
ATAAATCCTGAACCATATCAGTTTCTTCTCTCAGAATCCTACCAAGCAAG
CAGAAAGCTTTTAATTAGTTTCTGAAAACATGGCAAAAACAGGCTGTCTT
TTGCTATTGCTCTCTCTCCTCTACATTATAAGCTTGGTCACAGCTGCCGG
GATTGCTGACACAAGATTTATCAGAAGTTCTTGCAAATCCACAACTTATC
CAGCGCTGTGCGTGCAGTCTCTCTCAGCTTATGCCCCATCAATTCAACAA
AGCCCCCGGCAACTGGCTGTCACAGCCTTGTCCGTGAGCCTCTCCAGGGC
CCAATCCGCAAAGTCATTCGTGACCAAGCTGAGGAAGTTCAGGAACCTGA
AGCACAGAGAGTATGAGGCGATTGCCGACTGCTTGGATGAGATGGGTGAC
ACTGTGGACCGGCTCAGCAAGTCGGTTCAGGAGCTGAACCACATGGGTCA
GGGCCAAGGGTCAGGACTTTCTGTGGGACATGAGCAACGTTGAGACATGG
GTTAATGCTGCTTTAACTGATGAAAACACTTGTACTGATGGGGTCGGGGC
ACAGGCCTTGGAAGGGAAAGGTTAAGTCCCTCCTGTGAAGGGTTAAAGGT
GTAAATGTTTGCTCCCGCCCCTACCCTCGACCCCTTTCCTCGCACCAAAA
CCCTGGCCGGGAACAACCCTGACCCCCGCTACACCATCTCGGCTTCGACA
ACTA
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