EY688398

Overview
NameEY688398
Unique NameEY688398
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY688398 vs. ExPASy Swiss-Prot
Match: PGLR4_ARATH (Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.800e-15
Identity = 36/70 (51.43%), Postives = 53/70 (75.71%), Query Frame = -1 
Query:  279 LRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGN 488
            +RF+ S N+ V G+ IQNSPQ H+KFD C GV+++++ +SSP  SPNTDGIHL N++ V I+ S ++ G+
Sbjct:  213 IRFFMSNNIEVKGLRIQNSPQFHMKFDGCQGVLINEIQISSPKLSPNTDGIHLGNTRSVGIYNSVVSNGD 282
The following BLAST results are available for this feature:
BLAST of EY688398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PGLR4_ARATH9.800e-1551.43Polygalacturonase At1g48100 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-070-B12-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688398 ID=EY688398; Name=EY688398; organism=Citrus sinensis; type=EST; length=617bp
CTTCTTGCCATGTGCTGGACAATAAGGCTACGAGGTCTGGATAAGATTGT
CAGTGAATTTTAAGGAACCTGCATCACCCGCATGTCCCTTACGCAACACC
CTCTTTCTTTGATTTCTGTTGGGTAAGTGGATATGACAATGCTGTCAAGT
GTTCCATGTTAACCTCAATTTGACCCTGCAGGTCTTCTTGTTTGTTGAGA
TTCAAGCTTGACCCGCAGCTCATCATGTGTGGTTAAATTTGGTTTATATG
GCAACATTATTCATTTACGAGCAATGTAATTACCGCATGCAAGATTGGAA
GTATGAATTAGCACATCCTTGGAGTTTTGCAGGTGAATTCCATCTGTGTT
GGGACTATCACCAGGCGATGAAACGCTCACATCATGTACCACAACTCCAA
TGCAATTATCAAACTTGAGGTGGCATTGCGGACTGTTTTGAATTGTTATT
CCGGTAACTGTAACATTAAAACTCCCGTAGAACCTCAAAGCCTGTTACAT
AACAATACATGATGTTAGAGGACTGCATAGCCATGAATTTCAATTTGAAT
TTTTGCAATGATTAAGTGGTCATTACTGTTGGCTTANCACAAACAAAAAC
AAAAACACAACANACAC
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