EY728372

Overview
NameEY728372
Unique NameEY728372
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig819 contig Csv1_Contig819:382..1174. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY728372 vs. ExPASy Swiss-Prot
Match: EI2BA_DICDI (Translation initiation factor eIF-2B subunit alpha OS=Dictyostelium discoideum GN=eif2b1 PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 4.136e-60
Identity = 122/252 (48.41%), Postives = 169/252 (67.06%), Query Frame = 3
Query:   66 SISLTAGCDLFMRYVTRTSALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDMGPALRPIDFGVPI-----------PSKVEVETSARDYTPPQYLTLLFTDLGVLTPSVVSDELIPLY 788
            SISL++ CD F+R+VT+ + L++ +F++ +S L+ER E+    S  +R  I+ L+  FI DG TILVHGFSRVV+ +L  AA   K F V+ TE RPD SG + A  L   ++PVKL++D  V+  +D+VD V VGA+ +VE+GGI+N +GTYQI++VA +  KP YVAAES+KF R YPL+Q D+   L+      P            P ++ +++   DYTPP Y+TLLFT+LGVLTPS VSDELI LY
Sbjct:   70 SISLSSVCDSFIRFVTKRTELDFPNFDTCKSNLVERGEQLSNKSSMSRTKISQLADKFIRDGVTILVHGFSRVVLGLLLHAAFQGKRFSVIVTESRPDSSGYKTAARLQAANIPVKLIMDGGVSRIIDKVDYVLVGAEAIVENGGIVNKIGTYQISIVAKAFKKPFYVAAESFKFTRSYPLNQSDI-ENLKNDHISEPFKACRSCSSCENPEQLTIDSPTLDYTPPSYITLLFTELGVLTPSAVSDELIKLY 320          
BLAST of EY728372 vs. ExPASy Swiss-Prot
Match: EI2BA_RAT (Translation initiation factor eIF-2B subunit alpha OS=Rattus norvegicus GN=Eif2b1 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.006e-55
Identity = 119/249 (47.79%), Postives = 165/249 (66.27%), Query Frame = 3
Query:   63 TSISLTAGCDLFMRYVTRTSALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDM-------GPALRPIDFGVPIPSKVEVETSARDYTPPQYLTLLFTDLGVLTPSVVSDELIPLY 788
            +S+++++G +LF+R+++ TS LEY D++  +  +IER E F      +R  IA L   FI DG  IL H +SRVV+ VL+ A   KK F V  TE +PD SG ++A  L  L+VPV +++D+AV Y M++VD+V VGA+GVVE+GGIIN +GT Q+A+ A + NKP YV AES+KF RL+PL+Q+D+          L+ +  G      ++ E    DYT P  +TLLFTDLGVLTPS VSDELI LY
Sbjct:   61 SSVAVSSGGELFLRFISLTS-LEYSDYSKCKKIMIERGELFLSRISLSRTKIASLCHAFIKDGARILTHAYSRVVLRVLEEAVAAKKRFSVYITESQPDLSGKKMAKALCHLNVPVTVVLDAAVGYIMEKVDLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFPLNQQDVPDKFKYKADTLKSVQAG----QDLKEEHPWVDYTSPSLITLLFTDLGVLTPSAVSDELIKLY 304          
BLAST of EY728372 vs. ExPASy Swiss-Prot
Match: EI2BA_BOVIN (Translation initiation factor eIF-2B subunit alpha OS=Bos taurus GN=EIF2B1 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.006e-55
Identity = 120/250 (48.00%), Postives = 164/250 (65.60%), Query Frame = 3
Query:   63 TSISLTAGCDLFMRYVTRTSALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDMGPALRPIDFGVPIPSKVEVETSAR--------DYTPPQYLTLLFTDLGVLTPSVVSDELIPLY 788
            +S+++++G +LF+R+++ TS LEY D++  +  +IER E F      +R  IA L   FI DG  IL H +SRVV+ VL+ A   KK F V  TE +PD SG ++A  L  L+VPV +++D+AV Y M++VD+V VGA+GVVE+GGIIN +GT Q+A+ A + NKP YV AES+KF RL+PL+Q+D+     P  F     +   V+T           DYT P  +TLLFTDLGVLTPS VSDELI LY
Sbjct:   61 SSVAVSSGGELFLRFISLTS-LEYSDYSKCKKIMIERGEIFLRRISLSRNKIADLCHTFIKDGARILTHAYSRVVLRVLEAAVAAKKRFSVYITESQPDLSGKKMAKALCHLNVPVTVVLDAAVGYIMEKVDLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFPLNQQDV-----PDKFKYKADTLKSVQTGQDLREEHPWVDYTSPSLITLLFTDLGVLTPSAVSDELIKLY 304          
BLAST of EY728372 vs. ExPASy Swiss-Prot
Match: EI2BA_MOUSE (Translation initiation factor eIF-2B subunit alpha OS=Mus musculus GN=Eif2b1 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 6.833e-55
Identity = 118/249 (47.39%), Postives = 165/249 (66.27%), Query Frame = 3
Query:   63 TSISLTAGCDLFMRYVTRTSALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDM-------GPALRPIDFGVPIPSKVEVETSARDYTPPQYLTLLFTDLGVLTPSVVSDELIPLY 788
            +S+++++G +LF+R+++ TS LEY D++  +  +IER E F      +R  IA L   FI DG  IL H +SRVV+ VL+ A   KK F V  TE +PD SG ++A  L+ L+VPV +++D+AV Y M++ D+V VGA+GVVE+GGIIN +GT Q+A+ A + NKP YV AES+KF RL+PL+Q+D+          L+ +  G      ++ E    DYT P  +TLLFTDLGVLTPS VSDELI LY
Sbjct:   61 SSVAVSSGGELFLRFISLTS-LEYSDYSKCKKIMIERGELFLRRISLSRNKIANLCHTFIKDGARILTHAYSRVVLRVLEEAVAAKKRFSVYITESQPDLSGKKMAKALSHLNVPVTVVLDAAVGYIMEKADLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFPLNQEDVPDKFKYKADTLKSVQTG----QDLKEEHPWVDYTSPSLITLLFTDLGVLTPSAVSDELIKLY 304          
BLAST of EY728372 vs. ExPASy Swiss-Prot
Match: EI2BA_MACFA (Translation initiation factor eIF-2B subunit alpha OS=Macaca fascicularis GN=EIF2B1 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.988e-54
Identity = 118/249 (47.39%), Postives = 163/249 (65.46%), Query Frame = 3
Query:   63 TSISLTAGCDLFMRYVTRTSALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDM-------GPALRPIDFGVPIPSKVEVETSARDYTPPQYLTLLFTDLGVLTPSVVSDELIPLY 788
            +S+++++G +LF+R+++ TS LEY D++  +  +IER E F      +R  IA L   FI DG TIL H +SRVV+ VL+ A   KK F V  TE +PD SG ++A  L  L+VPV +++D+AV Y M++ D+V VGA+GVVE+GGIIN +GT Q+A+ A + NKP Y  AES+KF RL+PL+Q+D+          L+    G      ++ E    DYT P  +TLLFTDLGVLTPS VSDELI LY
Sbjct:   61 SSVAVSSGGELFLRFISLTS-LEYSDYSKCKKIMIERGELFLRRISLSRNKIADLCHTFIKDGATILTHAYSRVVLRVLEAAVAAKKRFSVYVTESQPDLSGKKMAKALCHLNVPVTVVLDAAVGYIMEKADLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYAVAESFKFVRLFPLNQQDVPDKFKYKADTLKVAQTG----QDLKEEHPWVDYTAPSLITLLFTDLGVLTPSAVSDELIKLY 304          
BLAST of EY728372 vs. ExPASy Swiss-Prot
Match: EI2BA_PONAB (Translation initiation factor eIF-2B subunit alpha OS=Pongo abelii GN=EIF2B1 PE=2 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 2.597e-54
Identity = 118/249 (47.39%), Postives = 163/249 (65.46%), Query Frame = 3
Query:   63 TSISLTAGCDLFMRYVTRTSALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDM-------GPALRPIDFGVPIPSKVEVETSARDYTPPQYLTLLFTDLGVLTPSVVSDELIPLY 788
            +S+++++G +LF+R+++  S LEY D++  +  +IER E F      +R  IA L   FI DG TIL H +SRVV+ VL+ A   KK F V  TE +PD SG ++A  L  L+VPV +++D+AV Y M++ D+V VGA+GVVE+GGIIN +GT Q+A+ A + NKP YV AES+KF RL+PL+Q+D+          L+    G      ++ E    DYT P  +TLLFTDLGVLTPS VSDELI LY
Sbjct:   61 SSVAVSSGGELFLRFISLAS-LEYSDYSKCKKIMIERGELFLRRISLSRNKIADLCHTFIKDGATILTHAYSRVVLRVLEAAVAAKKRFSVYVTESQPDLSGKKMAKALCHLNVPVTVVLDAAVGYIMEKADLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFPLNQQDVPDKFKYKADTLKVAQTG----QDLKEEHPWVDYTAPSLITLLFTDLGVLTPSAVSDELIKLY 304          
BLAST of EY728372 vs. ExPASy Swiss-Prot
Match: EI2BA_HUMAN (Translation initiation factor eIF-2B subunit alpha OS=Homo sapiens GN=EIF2B1 PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.597e-54
Identity = 118/249 (47.39%), Postives = 163/249 (65.46%), Query Frame = 3
Query:   63 TSISLTAGCDLFMRYVTRTSALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDM-------GPALRPIDFGVPIPSKVEVETSARDYTPPQYLTLLFTDLGVLTPSVVSDELIPLY 788
            +S+++++G +LF+R+++  S LEY D++  +  +IER E F      +R  IA L   FI DG TIL H +SRVV+ VL+ A   KK F V  TE +PD SG ++A  L  L+VPV +++D+AV Y M++ D+V VGA+GVVE+GGIIN +GT Q+A+ A + NKP YV AES+KF RL+PL+Q+D+          L+    G      ++ E    DYT P  +TLLFTDLGVLTPS VSDELI LY
Sbjct:   61 SSVAVSSGGELFLRFISLAS-LEYSDYSKCKKIMIERGELFLRRISLSRNKIADLCHTFIKDGATILTHAYSRVVLRVLEAAVAAKKRFSVYVTESQPDLSGKKMAKALCHLNVPVTVVLDAAVGYIMEKADLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFPLNQQDVPDKFKYKADTLKVAQTG----QDLKEEHPWVDYTAPSLITLLFTDLGVLTPSAVSDELIKLY 304          
BLAST of EY728372 vs. ExPASy Swiss-Prot
Match: EI2BA_YEAST (Translation initiation factor eIF-2B subunit alpha OS=Saccharomyces cerevisiae GN=GCN3 PE=1 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.750e-53
Identity = 114/246 (46.34%), Postives = 156/246 (63.41%), Query Frame = 3
Query:   66 SISLTAGCDLFMRYVTRTSALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDMGPALRPIDFGVPIPSKVEVETSAR----DYTPPQYLTLLFTDLGVLTPSVVSDELIPLYW 791
            S+SL AGCD+FMR+V R   L Y D+ + +  LIE  + F   + K+R  IA +  DFI D   ILVHG+SR V  +L  AA     FR + TE RP + G +L   L +  +PV L++DSAV   +D+VD VFVGA+GV ESGGIIN++GTY + ++AH+  KP YV  ES+KF R++PL   D+  A  P+DF        ++E + R    DYT  +Y+T L TDLGVLTPS VS+ELI +++
Sbjct:   63 SVSLRAGCDIFMRFVLRNLHL-YGDWENCKQHLIENGQLFVSRAKKSRNKIAEIGVDFIADDDIILVHGYSRAVFSLLNHAANKFIRFRCVVTESRPSKQGNQLYTLLEQKGIPVTLIVDSAVGAVIDKVDKVFVGAEGVAESGGIINLVGTYSVGVLAHNARKPFYVVTESHKFVRMFPLSSDDLPMAGPPLDF---TRRTDDLEDALRGPTIDYTAQEYITALITDLGVLTPSAVSEELIKMWY 304          
BLAST of EY728372 vs. ExPASy Swiss-Prot
Match: EI2BA_SCHPO (Translation initiation factor eIF-2B subunit alpha OS=Schizosaccharomyces pombe GN=tif221 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.798e-46
Identity = 111/267 (41.57%), Postives = 154/267 (57.68%), Query Frame = 3
Query:   66 SISLTAGCDLFMRYVTRTSALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDMGPALRPI-DFGVPIPSKVEVE------------------------TSARDYTPPQYLTLLFTDLGVL-TPSVVSDELIPLY 788
            +ISL+AGCD+F R+VTR S  +  DF   +  L+E  + F + +   R+ IA L    I DG  IL HGFSR V  VL  AA+    F+V  TE RP  SG  +   L    +P  +++DSAV++TM+ VD+V VGA+GVVE+GG+IN +GT+Q+A+ A   +KP Y  AES+KF R++PL Q D+ P  RPI +F  P P  V  E                            D TPP++++ L TDLG++ + S VS+ELI LY
Sbjct:   76 NISLSAGCDIFQRFVTR-SLHDVGDFEQCKRHLVENGKLFIQRARACRQRIAHLGYPLIRDGSVILTHGFSRGVAAVLLAAAKRHVRFKVFVTESRPSGSGCLMTRTLKNACIPTCMVLDSAVSFTMNRVDLVLVGAEGVVENGGLINQIGTFQLAVFAKHAHKPFYAVAESHKFVRMFPLSQYDI-PFSRPILEFDDPSPETVHPEPEPIPTPSDAIHNELIMNEEQIRNNPTLDVTPPEFVSGLITDLGIIDSKSGVSEELIKLY 340          
BLAST of EY728372 vs. ExPASy Swiss-Prot
Match: EI2BA_CAEEL (Probable translation initiation factor eIF-2B subunit alpha OS=Caenorhabditis elegans GN=ZK1098.4 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.171e-38
Identity = 93/246 (37.80%), Postives = 140/246 (56.91%), Query Frame = 3
Query:   57 DTTSISLTAGCDLFMRYVTRTSA--LEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDMGPALRPIDFGVPIPSKVEVETSARDYTPPQYLTLLFTDLGVLTPSVVSDELIPLY 788
            D +S S+ +  DLF R+ +   A  L+ EDF+       +RA  F +    +R  I+  ++ F      IL H +S+VV+E +  A ++     V  TE +PD SG  +  EL K  VP  L++DS V Y M+ +  V VGA+GV+E+GGIIN +GT  + ++A S + PVYV AE+ KF R +PL+Q D+ P        V   + +E+E    DYT P++LTL+ TD+G + P  V +ELI +Y
Sbjct:   60 DYSSTSIRSAADLFTRFTSLAPAALLDQEDFSQVLDLYRQRARSFIKNVRGSRAKISKCARLFFTHHMNILTHSYSKVVLETILDAHKSGYHLHVWVTESQPDASGKLVFEELKKNGVPTTLVLDSCVGYVMERIQAVLVGAEGVMETGGIINKIGTVNVCIIAKSRHVPVYVCAETIKFVREFPLNQADI-PQEFKYRTSVIERNNLELEHPDVDYTAPEFLTLIITDVGAMKPEAVGEELIKMY 304          
The following BLAST results are available for this feature:
BLAST of EY728372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
EI2BA_DICDI4.136e-6048.41Translation initiation factor eIF-2B subunit alpha... [more]
EI2BA_RAT4.006e-5547.79Translation initiation factor eIF-2B subunit alpha... [more]
EI2BA_BOVIN4.006e-5548.00Translation initiation factor eIF-2B subunit alpha... [more]
EI2BA_MOUSE6.833e-5547.39Translation initiation factor eIF-2B subunit alpha... [more]
EI2BA_MACFA1.988e-5447.39Translation initiation factor eIF-2B subunit alpha... [more]
EI2BA_PONAB2.597e-5447.39Translation initiation factor eIF-2B subunit alpha... [more]
EI2BA_HUMAN2.597e-5447.39Translation initiation factor eIF-2B subunit alpha... [more]
EI2BA_YEAST3.750e-5346.34Translation initiation factor eIF-2B subunit alpha... [more]
EI2BA_SCHPO5.798e-4641.57Translation initiation factor eIF-2B subunit alpha... [more]
EI2BA_CAEEL1.171e-3837.80Probable translation initiation factor eIF-2B subu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-002-H05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728372 ID=EY728372; Name=EY728372; organism=Citrus sinensis; type=EST; length=793bp
CCACGCGTCCGCTTCCAGTCAAAATGACTATCCCTTTGCGTGTTTCCCAG
TCTTGGGACACGACATCTATTTCGCTGACAGCAGGCTGTGACCTGTTCAT
GCGATACGTTACCAGAACTTCAGCTTTAGAATATGAGGATTTTAATTCAG
CTAGATCTCGATTGATTGAACGTGCAGAGAAGTTTGGAGAGATATCTTAT
AAGGCACGAAAGATCATTGCAATGCTTAGTCAAGATTTTATATTTGATGG
TTGTACTATTTTGGTGCACGGCTTTTCCAGAGTTGTCATGGAAGTACTGA
AGATGGCAGCACAAAATAAGAAACTCTTTAGAGTTCTCTGCACAGAGGGA
AGGCCAGACAGATCAGGACTAAGATTGGCCAATGAGCTGGCCAAACTTGA
TGTTCCAGTGAAGCTCCTAATAGATTCTGCAGTTGCATATACAATGGACG
AAGTGGATATGGTATTTGTTGGAGCAGATGGAGTGGTCGAAAGTGGAGGC
ATTATTAACATGATGGGTACTTACCAGATTGCATTGGTTGCACACAGCAT
GAACAAACCAGTTTATGTGGCAGCTGAGAGCTACAAGTTTGCTCGTCTTT
ATCCATTGGACCAGAAAGACATGGGTCCTGCTTTACGCCCCATTGATTTT
GGGGTACCCATACCATCCAAGGTTGAAGTTGAGACATCTGCTCGGGATTA
TACTCCTCCACAATATCTTACTCTGCTATTCACAGATTTAGGTGTCCTTA
CTCCATCTGTAGTTAGTGATGAGCTTATTCCGCTTTACTGGTT
back to top