EY687018

Overview
NameEY687018
Unique NameEY687018
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY687018 vs. ExPASy Swiss-Prot
Match: ESF1_RAT (ESF1 homolog OS=Rattus norvegicus GN=Esf1 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.179e-18
Identity = 52/113 (46.02%), Postives = 64/113 (56.64%), Query Frame = 2
Query:  509 PEIDNETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEGEVRGPVGLFDSQXXXXXXXXXXXXXXXKLRAYEKSTLRYCYAGVEWDSRGTADCLY 847
            P  D  T RLA+ NMDW  +KA DLL + +SF PK G + SV +YPSEFG QRMKE +++GPV L                   KLR Y+   L+Y YA VE DS  TA  +Y
Sbjct:  333 PRADEITRRLAVCNMDWDRLKAKDLLALFNSFKPKGGVVFSVKIYPSEFGKQRMKEEQIQGPVELLS---IPEDAPEKDWASREKLRDYQFKRLKYYYAVVECDSPETASKIY 442          
BLAST of EY687018 vs. ExPASy Swiss-Prot
Match: ESF1_HUMAN (ESF1 homolog OS=Homo sapiens GN=ESF1 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.430e-18
Identity = 52/113 (46.02%), Postives = 64/113 (56.64%), Query Frame = 2
Query:  509 PEIDNETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEGEVRGPVGLFDSQXXXXXXXXXXXXXXXKLRAYEKSTLRYCYAGVEWDSRGTADCLY 847
            P  D  T RLA+ NMDW  +KA DLL + +SF PK G I SV +YPSEFG +RMKE +V+GPV L                   KLR Y+   L+Y YA V+ DS  TA  +Y
Sbjct:  341 PRADEITRRLAVCNMDWDRLKAKDLLALFNSFKPKGGVIFSVKIYPSEFGKERMKEEQVQGPVELLS---IPEDAPEKDWTSREKLRDYQFKRLKYYYAVVDCDSPETASKIY 450          
BLAST of EY687018 vs. ExPASy Swiss-Prot
Match: ESF1_MOUSE (ESF1 homolog OS=Mus musculus GN=Esf1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.850e-18
Identity = 51/113 (45.13%), Postives = 63/113 (55.75%), Query Frame = 2
Query:  509 PEIDNETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEGEVRGPVGLFDSQXXXXXXXXXXXXXXXKLRAYEKSTLRYCYAGVEWDSRGTADCLY 847
            P  D  T RLA+ NMDW  +KA DLL + +SF PK G + SV +YPSEFG +RMKE +V+GPV L                   KLR Y+   L+Y YA  E DS  TA  +Y
Sbjct:  335 PRADEITRRLAVCNMDWDRLKAKDLLALFNSFKPKGGVVFSVKIYPSEFGKERMKEEQVQGPVELLS---IPEDAPEKDWASREKLRDYQFKRLKYYYAVAECDSPETASKIY 444          
BLAST of EY687018 vs. ExPASy Swiss-Prot
Match: ESF1_SCHPO (Pre-rRNA-processing protein esf1 OS=Schizosaccharomyces pombe GN=esf1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.033e-14
Identity = 52/137 (37.96%), Postives = 67/137 (48.91%), Query Frame = 2
Query:  521 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEGEVRGPV-GLF---------------------------DSQXXXXXXXXXXXXXXXKLRAYEKSTLRYCYAGVEWDSRGTADCLY 847
            +ET+RLA+VNMDW +++AVDL V LSSF P  G++L V++YPSEFG  RM    V+GP   +F                           D +               KLR Y+   LRY YA VE DS  TA  +Y
Sbjct:  177 SETNRLAVVNMDWDNLQAVDLFVALSSFCPPGGKLLKVSIYPSEFGKSRMAAEHVQGPPRDIFTPADNQPSSAELHEAQKFGFDNNESDQDEEDALIEEDLGNEFDMVKLRQYQLERLRYYYAVVECDSVRTAKVIY 313          
BLAST of EY687018 vs. ExPASy Swiss-Prot
Match: ESF1_ASHGO (Pre-rRNA-processing protein ESF1 OS=Ashbya gossypii GN=ESF1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.924e-14
Identity = 49/130 (37.69%), Postives = 67/130 (51.54%), Query Frame = 2
Query:  509 PEIDNETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEGEVRGPV-GLFDSQXXXXXXXXXXXXXXXK----------------LRAYEKSTLRYCYAGVEWDSRGTADCLY 847
            PE  + +  LA+VN+DW HVK  DLLV  +SF+P+ G+I  VA+YPSEFG +RM+  EV GP   +F S+               K                LR Y+   LRY YA V  ++  TA+ +Y
Sbjct:  144 PESGDPSKVLAVVNLDWDHVKCADLLVAFNSFVPEGGKIERVAIYPSEFGKERMQREEVEGPPREVFKSKKDKKAKQDDDDEIGLKDLYEQGDAEKDYDSKALRRYQLERLRYYYAVVYCNNVATAEAIY 273          
BLAST of EY687018 vs. ExPASy Swiss-Prot
Match: ESF1_YEAST (Pre-rRNA-processing protein ESF1 OS=Saccharomyces cerevisiae GN=ESF1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.322e-13
Identity = 35/64 (54.69%), Postives = 47/64 (73.44%), Query Frame = 2
Query:  503 AIPEIDNETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEGEVRGP 694
            A PE  + +  LA+VN+DW HVK+ DL++  SSF+PK G+I  VA+YPSEFG +RM+  EV GP
Sbjct:  138 AKPESGDISKNLAVVNLDWDHVKSEDLMITFSSFVPKGGKIERVAIYPSEFGKERMQREEVEGP 201          
The following BLAST results are available for this feature:
BLAST of EY687018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ESF1_RAT1.179e-1846.02ESF1 homolog OS=Rattus norvegicus GN=Esf1 PE=1 SV=... [more]
ESF1_HUMAN3.430e-1846.02ESF1 homolog OS=Homo sapiens GN=ESF1 PE=1 SV=1[more]
ESF1_MOUSE5.850e-1845.13ESF1 homolog OS=Mus musculus GN=Esf1 PE=1 SV=1[more]
ESF1_SCHPO1.033e-1437.96Pre-rRNA-processing protein esf1 OS=Schizosaccharo... [more]
ESF1_ASHGO3.924e-1437.69Pre-rRNA-processing protein ESF1 OS=Ashbya gossypi... [more]
ESF1_YEAST3.322e-1354.69Pre-rRNA-processing protein ESF1 OS=Saccharomyces ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-036-A12-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY687018 ID=EY687018; Name=EY687018; organism=Citrus sinensis; type=EST; length=861bp
CCACGCGTCCGACAAAAACAAGAACAAAAGGAAAAACAGGTCAAAGGATG
GCTCAGACAACAACAAAAACAAAAAGATCATCACAGATTCTCGATTTGCG
TCCGTACACTCGGACCCCAGGTTCCAGAATGTTCCGAAGCAAAAATCGAA
AGTCGCTATTGACTCCCGATTCGACCGCATGTTCACCGACAAAAATTTCG
CTTCATCAACGGCGCCGTTCGACAAAAGAGGCAAGCCTAAGAAGAATCTA
AAAACGTCGAAAAGCTCTCTGCAACATTATTACCGAATTGAAGCGGAAGA
TAAAAAAAGCGATGAAGATGAAGAAATTGAAGAAGAAGAGAGAAGAAACG
AGACTGATAGCGAGAGTGAGTTGAAAGAAGCTGCTGACGTGTCTTCGGGA
AGTGGGACTGAGGAGGAAGATGATGACGACGTGTCGGAGAGCACTACTGA
TGACGAAGAGGAAGATGTTGATTTTGATGAAGGTCCTGAAGAAGAGGAAG
AAGCTATACCAGAAATTGACAACGAAACTCACAGGCTTGCTATTGTTAAT
ATGGACTGGAGACATGTTAAGGCGGTTGATTTGCTTGTAATATTGAGCTC
ATTTCTGCCGAAAGATGGACAAATTTTATCTGTGGCAGTCTATCCATCTG
AGTTTGGGATTCAGCGAATGAAAGAGGGAGAAGTTCGTGGTCCTGTTGGT
CTATTCGATAGTCAAAATGAGAACAGTGACGACGAGGATAATGATGAAAT
TGATGAGGAAAAATTGCGTGCTTATGAGAAAAGTACACTAAGGTACTGCT
ATGCTGGAGTGGAATGGGATTCTAGGGGCACAGCAGATTGCCTTTACGGA
GCGTGGGGAGG
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