EY687017

Overview
NameEY687017
Unique NameEY687017
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length849
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig20 contig Csv1_Contig20:40..888. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY687017 vs. ExPASy Swiss-Prot
Match: C3H47_ARATH (Zinc finger CCCH domain-containing protein 47 OS=Arabidopsis thaliana GN=At3g55980 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.506e-30
Identity = 81/183 (44.26%), Postives = 103/183 (56.28%), Query Frame = 3
Query:   12 MRQNMNQQLRSSYPASSSPVR-PSQSFGIDTSGAIAAAVLSSRSAAFAKRSQSFIERNTVSRHSGFSSPDSTAAVMPSNLADWGSPDGKLDWGVQREDLNKLRKSASFGIRSNGGSVATSETSTPATADEPDVSWVQSLVRDSPSIRSGQFGFEEQQCHLNSGGSEMLPAWVEQLYMEQEQLV 557
            M QNMNQ     YP  SSPVR P    G ++S A A AV+ +RS AFAKRS SF                +T A   SNL+DWGSP+GKL+WG++ E+LNK+R+S SFGI  N  + A  +       DEPDVSWV SLV+DS  +    FG  E+           + +W EQ+Y E+EQ V
Sbjct:  431 MGQNMNQH----YP--SSPVRQPPSQHGFESSAAAAVAVMKARSTAFAKRSLSF--------------KPATQAAPQSNLSDWGSPNGKLEWGMKGEELNKMRRSVSFGIHGNNNNNAARD-----YRDEPDVSWVNSLVKDSTVVSERSFGMNER---------VRIMSWAEQMYREKEQTV 579          
BLAST of EY687017 vs. ExPASy Swiss-Prot
Match: C3H29_ARATH (Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.570e-28
Identity = 77/175 (44.00%), Postives = 104/175 (59.43%), Query Frame = 3
Query:   48 YPASSSPVRPSQSFGIDTSGAIAAAVLSSRSAAFAKRSQSFIERNTVSRHSGFSSPDSTAAVMPSNLADWGSPDGKLDWGVQREDLNKLRKSASFGIRSNGGSVATSETSTPAT--ADEPDVSWVQSLVRDSPSIRSGQFGFEEQQCHLNSGGSE---MLPAWVEQLYMEQEQLV 557
            YP  SSPVR     G ++S A+AAAV+++RS+AFAKRS SF                   A + SN++DWGSP+GKL+WG+QR++LNKLR+SASFGI  N      +  S PA   +DEPDVSWV SLV+++   R      E     +N   S     LP+W EQ+Y++ EQ +
Sbjct:  448 YP--SSPVRQPPPHGFESSAAMAAAVMNARSSAFAKRSLSF-----------------KPAPVASNVSDWGSPNGKLEWGMQRDELNKLRRSASFGIHGNN----NNSVSRPARDYSDEPDVSWVNSLVKENAPERVN----ERVGNTVNGAASRDKFKLPSWAEQMYIDHEQQI 595          
BLAST of EY687017 vs. ExPASy Swiss-Prot
Match: C3H33_ORYSJ (Zinc finger CCCH domain-containing protein 33 OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.694e-25
Identity = 69/143 (48.25%), Postives = 88/143 (61.54%), Query Frame = 3
Query:    9 PMRQNMNQQLRSSYPASSSPVRPSQSFGIDTSGAIAAAVLSSRSAAFAKRSQSFIERN-TVSRHSGFSSPDSTAAVMPSNLADWGSPDGKLDWGVQREDLNKLRKSASFGIRSNGGSVATSETSTPATADEPDVSWVQSLVRD 434
            P   +M    +   P S      + +FG+D S  +A A++SSR++AFAKRSQSFI+R           SP +T A  PS L+DWGSPDGKLDWGVQ ++L+KLRKSASF  R      +    +T A A EPDVSWV SLV+D
Sbjct:  448 PAYSSMADTTQMHMPTSPMVGGANTAFGLDHS--MAKAIMSSRASAFAKRSQSFIDRGGRAPAARSLMSPATTGA--PSILSDWGSPDGKLDWGVQGDELHKLRKSASFAFRGQ----SAMPVATHAAAAEPDVSWVNSLVKD 582          
BLAST of EY687017 vs. ExPASy Swiss-Prot
Match: C3H66_ARATH (Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.302e-25
Identity = 80/184 (43.48%), Postives = 100/184 (54.35%), Query Frame = 3
Query:   15 RQNMNQQLRSSYPASSSPVRPSQSFGIDTSGAIAAAVLSSRSAAFAK-RSQSFIERNT-VSRHSGFSSPDSTAAVMPSNLADWGSPDGKLDWGVQREDLNKLRKSASFGIRSNGGSVATSETSTPATADEPDVSWVQSLVRDSPSIRSGQFGFEEQQCHLNSGGSEMLPAWVEQLYMEQEQLVA 560
            R  +N QL S+   SSSPV  +  F +D+S     AVL+SR+A FAK RSQSFIERN  ++ H   SS  +T       L DWGS DGKLDW VQ ++L KLRKS SF +R+ G         T    +EPDVSWV+ LV++    R                   + P W+EQ YME EQ VA
Sbjct:  457 RSVINPQLHSN-SLSSSPVGANSLFSMDSS-----AVLASRAAEFAKQRSQSFIERNNGLNHHPAISSMTTTC------LNDWGSLDGKLDWSVQGDELQKLRKSTSFRLRAGGMESRLPNEGT--GLEEPDVSWVEPLVKEPQETR-------------------LAPVWMEQSYMETEQTVA 607          
BLAST of EY687017 vs. ExPASy Swiss-Prot
Match: C3H24_ORYSJ (Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.103e-12
Identity = 55/149 (36.91%), Postives = 79/149 (53.02%), Query Frame = 3
Query:   27 NQQLRSSYPASSSPVRPSQSFGIDTSGAIAAAVLSSRS-------AAFAKRS-QSFIERNTVSRHSGFSSPDSTAAV---MPSNLADWGSPDGKLDWGVQREDLNKLRKSASFGIRSNGGSVATSETSTPATADEPDVSWVQSLVRDSP 440
            NQQL    P+ SS ++ S   GI + G ++   + S S       AA A+R  Q    R+  SR  G S+  ++  V   + S+ + WGSP G  DWGV  E+L KLR+S+SF +RS G              D+PD+SWV +LV++SP
Sbjct:  573 NQQL----PSHSSLLQAS--LGISSPGRMSPRCVESGSPMNSHLAAALAQREKQQQTMRSLSSRDLGPSAARASGVVGSPLSSSWSKWGSPSGTPDWGVNGEELGKLRRSSSFELRSGG--------------DDPDLSWVHTLVKESP 701          
The following BLAST results are available for this feature:
BLAST of EY687017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
C3H47_ARATH6.506e-3044.26Zinc finger CCCH domain-containing protein 47 OS=A... [more]
C3H29_ARATH3.570e-2844.00Zinc finger CCCH domain-containing protein 29 OS=A... [more]
C3H33_ORYSJ3.694e-2548.25Zinc finger CCCH domain-containing protein 33 OS=O... [more]
C3H66_ARATH6.302e-2543.48Zinc finger CCCH domain-containing protein 66 OS=A... [more]
C3H24_ORYSJ2.103e-1236.91Zinc finger CCCH domain-containing protein 24 OS=O... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-036-A10-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY687017 ID=EY687017; Name=EY687017; organism=Citrus sinensis; type=EST; length=849bp
CCACGCGTCCGATGCGACAGAACATGAACCAGCAGCTTCGCTCTAGCTAC
CCTGCATCTTCCTCTCCTGTGAGACCATCTCAATCCTTTGGGATTGATAC
CTCTGGGGCCATTGCAGCTGCAGTTTTGAGTTCTAGATCAGCTGCCTTTG
CAAAGCGGAGTCAGAGCTTCATCGAGCGAAATACTGTCAGTCGTCATTCT
GGGTTTTCTTCACCAGATTCAACAGCTGCTGTAATGCCCTCTAACCTGGC
TGATTGGGGTTCCCCTGATGGTAAGTTGGACTGGGGCGTCCAGCGAGAGG
ATCTGAACAAGCTGCGGAAATCTGCATCTTTTGGTATTAGAAGCAATGGT
GGCAGTGTGGCAACATCTGAAACCTCAACACCAGCAACTGCGGATGAGCC
TGATGTGTCTTGGGTTCAGTCCCTGGTCAGGGACAGCCCATCCATAAGGT
CTGGTCAATTTGGCTTTGAGGAGCAGCAGTGTCATCTTAACTCTGGGGGT
TCAGAGATGCTTCCAGCTTGGGTGGAGCAATTGTACATGGAGCAGGAGCA
GTTGGTGGCCTAGTACCAAACTTAGCCCCTATATAGTTATAAATTTAACT
TTTAACTAGATTTTGCCATTTTTTGAATTGTTATTAGTAATCATCAGCTG
TAAGTGAAAGGAAACGGTGAAGGAAAAGAAGTATAGCCCCATGGAGAAAA
CAAGGCCAGCAGTATCTAAGGAATTGCTTCAACTGCTGTTAGGGTAAAAA
TAATAGTTTACTTATTGGGCTTGGCATTTGGTCATCGCTTTTGGTGGACT
TCCCAATTCTTCCCAGGTGGGGAGATGCGGGAAGAATGGTCCTTCTGCT
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