EY687016

Overview
NameEY687016
Unique NameEY687016
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY687016_ssr381 microsatellite EY687016_ssr381:381..390. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY687016 vs. ExPASy Swiss-Prot
Match: PEL_ZINEL (Pectate lyase OS=Zinnia elegans PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.397e-14
Identity = 35/65 (53.85%), Postives = 42/65 (64.62%), Query Frame = 2
Query:   14 ESEWRNWNWRSEGDLMVNGAFFTXXXXXXXXXXXXXXXXXXRPSALVGPITGSAGALICKKGARC 208
            ESEW+NWNWRSEGDLM+NGA+F                   RPS LV  +T SAGAL+C+KG+RC
Sbjct:  337 ESEWKNWNWRSEGDLMLNGAYFRESGGRAASSFARASSLSGRPSTLVASMTRSAGALVCRKGSRC 401          
BLAST of EY687016 vs. ExPASy Swiss-Prot
Match: PEL18_ARATH (Probable pectate lyase 18 OS=Arabidopsis thaliana GN=At4g24780 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 9.205e-14
Identity = 33/65 (50.77%), Postives = 43/65 (66.15%), Query Frame = 2
Query:   14 ESEWRNWNWRSEGDLMVNGAFFTXXXXXXXXXXXXXXXXXXRPSALVGPITGSAGALICKKGARC 208
            ESEW+ WNWRS GDL++NGAFFT                  +PS+LVGP+T ++GAL C+KG+RC
Sbjct:  344 ESEWKRWNWRSSGDLLLNGAFFTPSGGAASSSYAKASSLGAKPSSLVGPLTSTSGALNCRKGSRC 408          
BLAST of EY687016 vs. ExPASy Swiss-Prot
Match: PEL5_ARATH (Probable pectate lyase 5 OS=Arabidopsis thaliana GN=At1g67750 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.329e-12
Identity = 32/64 (50.00%), Postives = 40/64 (62.50%), Query Frame = 2
Query:   17 SEWRNWNWRSEGDLMVNGAFFTXXXXXXXXXXXXXXXXXXRPSALVGPITGSAGALICKKGARC 208
            S+W+ WNWRSEGDL +NGAFFT                  RPS+LV  +T +AGAL C+KG+RC
Sbjct:  345 SKWKKWNWRSEGDLFLNGAFFTPSGGGASSSYAKASSLSARPSSLVASVTSNAGALFCRKGSRC 408          
BLAST of EY687016 vs. ExPASy Swiss-Prot
Match: PEL18_SOLLC (Probable pectate lyase P18 OS=Solanum lycopersicum GN=9612 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.867e-12
Identity = 35/67 (52.24%), Postives = 43/67 (64.18%), Query Frame = 2
Query:   14 ESEWRNWNWRSEGDLMVNGAFF--TXXXXXXXXXXXXXXXXXXRPSALVGPITGSAGALICKKGARC 208
            ES+WR+WNWRSEGDLM+NGA+F  T                  RPS+LVG IT +AG + CKKG+RC
Sbjct:  338 ESQWRSWNWRSEGDLMLNGAYFRQTGAGASSSSTYARASSLSARPSSLVGSITTNAGPVNCKKGSRC 404          
BLAST of EY687016 vs. ExPASy Swiss-Prot
Match: PEL11_ARATH (Putative pectate lyase 11 OS=Arabidopsis thaliana GN=At3g27400 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.597e-12
Identity = 31/65 (47.69%), Postives = 41/65 (63.08%), Query Frame = 2
Query:   14 ESEWRNWNWRSEGDLMVNGAFFTXXXXXXXXXXXXXXXXXXRPSALVGPITGSAGALICKKGARC 208
            ES+WR+WNWRSEGD+++NGA+F                   RPS+LVG IT +AG L C++G RC
Sbjct:  345 ESKWRDWNWRSEGDMLLNGAYFRESGAEAPSTYARASSLSARPSSLVGSITTTAGTLSCRRGRRC 409          
BLAST of EY687016 vs. ExPASy Swiss-Prot
Match: PEL22_ARATH (Probable pectate lyase 22 OS=Arabidopsis thaliana GN=At5g63180 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.507e-11
Identity = 34/67 (50.75%), Postives = 41/67 (61.19%), Query Frame = 2
Query:   14 ESEWRNWNWRSEGDLMVNGAFFT--XXXXXXXXXXXXXXXXXXRPSALVGPITGSAGALICKKGARC 208
            E EWRNWNWRSEGDL++NGAFFT                    RPS+ VG IT ++GAL CK+G+ C
Sbjct:  366 EDEWRNWNWRSEGDLLLNGAFFTYSGAGPAKSSSYSKASSLAARPSSHVGEITIASGALSCKRGSHC 432          
The following BLAST results are available for this feature:
BLAST of EY687016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PEL_ZINEL5.397e-1453.85Pectate lyase OS=Zinnia elegans PE=1 SV=1[more]
PEL18_ARATH9.205e-1450.77Probable pectate lyase 18 OS=Arabidopsis thaliana ... [more]
PEL5_ARATH1.329e-1250.00Probable pectate lyase 5 OS=Arabidopsis thaliana G... [more]
PEL18_SOLLC3.867e-1252.24Probable pectate lyase P18 OS=Solanum lycopersicum... [more]
PEL11_ARATH6.597e-1247.69Putative pectate lyase 11 OS=Arabidopsis thaliana ... [more]
PEL22_ARATH2.507e-1150.75Probable pectate lyase 22 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-036-A09-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY687016 ID=EY687016; Name=EY687016; organism=Citrus sinensis; type=EST; length=886bp
CCACGCGTCCGCAGAAAGTGAATGGAGGAATTGGAACTGGAGATCAGAGG
GGGACTTGATGGTGAACGGTGCATTTTTTACAGCATCAGGAGCAGGCGCC
TCATCGAGCTATGCAAGAGCTTCGAGCCTAGGTGCTAGACCATCGGCACT
TGTCGGTCCCATAACGGGCTCTGCTGGTGCACTTATCTGCAAGAAGGGGG
CTCGTTGCTGATTATAATTATGACCCCATTTGAAAACAATATTATTTTTT
TCTGCTAGTGATTATTGCGTTTGTTGGGATATAATTAGTTAGATAGAATT
AATTAAAACGGGTAGAAGCCAAAATTGAGGGAACAGGAGAAAAGCCTAAC
TATAGTATTTACTTGGCTTTTTCTTCTTCCCTCTCTCTCTTTTTTTTTTT
TTTTTTTTTTTTTAATCCTGGGTGCTTTCTACTCTTGGCTTTTTCTTTTT
CTTTTTTCTTTTCTTTCATTTTTACTCAAATCTGATTATTACAACCTCGA
CTTGTTGCTCTTAGAACTGTCCGGGGATTCTTTCGAAAATCTTGGCGGGC
TAAGATAATGCAAGTGCACAAGTGTTGGTTATATACTATAAAATTATCTA
TGTATTAATTTGGAATGAATTTGTAATTTAATTTGGGGAAGCCACCACGC
GCGCGGCGCGCGACTTTTGTGAAGGAGGGGGCGGCCGCTCCAGAAAGATC
CCAGGCTTACGTACGCGGGGCATGGGGAACCCCAAAGCCCTTCCAATAGG
GGCCCCCTAAATTCCATTTCACGTGGCCGGCCGTTTTTACACAGTCCGGG
ACATGGGAAACAACCCTGGGGCGTCTACCACAATTTATTACCGCCCTGTC
GCGCACACTCGCCCCCTTTTCCCCCAGAGCTGGGCG
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