EY686996

Overview
NameEY686996
Unique NameEY686996
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length544
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2854 contig Csv1_Contig2854:309..852. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY686996 vs. ExPASy Swiss-Prot
Match: TDT_ARATH (Tonoplast dicarboxylate transporter OS=Arabidopsis thaliana GN=TDT PE=2 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 1.319e-43
Identity = 87/109 (79.82%), Postives = 97/109 (88.99%), Query Frame = 2
Query:   17 PIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLATGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPTLGAYVFGTDGDV 343
            P VCLI+A ITEFTSNNATTTL++PLLI+IAK M +HPLLLMVPGAIGAQF+FLL TGTPSN+VGFTTGHIEI+DMIKTGLPLKIAG   L+ LMPTLGAYVF + G V
Sbjct:  432 PTVCLIAATITEFTSNNATTTLLVPLLIEIAKNMGIHPLLLMVPGAIGAQFAFLLPTGTPSNVVGFTTGHIEIKDMIKTGLPLKIAGTIFLSILMPTLGAYVFASMGGV 540          
BLAST of EY686996 vs. ExPASy Swiss-Prot
Match: S13A3_MOUSE (Solute carrier family 13 member 3 OS=Mus musculus GN=Slc13a3 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.569e-20
Identity = 41/102 (40.20%), Postives = 67/102 (65.69%), Query Frame = 2
Query:   20 IVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLATGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPTLGAYVF 325
            ++ ++ A  TEF SN AT  + LP+L ++A  +HVHPL LM+PG +G  ++F+L   TP N + F+TGH+ ++DM++TGL + + G+  L+  M T    +F
Sbjct:  468 LITVVIAFFTEFASNTATIIIFLPVLAELAIRLHVHPLYLMIPGTVGCSYAFMLPVSTPPNSIAFSTGHLLVKDMVRTGLLMNLMGVLLLSLAMNTWAQTIF 569          
BLAST of EY686996 vs. ExPASy Swiss-Prot
Match: S13A3_RAT (Solute carrier family 13 member 3 OS=Rattus norvegicus GN=Slc13a3 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.789e-20
Identity = 40/102 (39.22%), Postives = 66/102 (64.71%), Query Frame = 2
Query:   20 IVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLATGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPTLGAYVF 325
            ++ ++ A  TEF SN AT  + LP+L ++A  +HVHPL LM+PG +   ++F+L   TP N + F+TGH+ ++DM++TGL + + G+  L+  M T    +F
Sbjct:  468 LITVVIAFFTEFASNTATIIIFLPVLAELAIRLHVHPLYLMIPGTVSCSYAFMLPVSTPPNSIAFSTGHLLVKDMVRTGLLMNLMGVLLLSLAMNTWAQAIF 569          
BLAST of EY686996 vs. ExPASy Swiss-Prot
Match: S13A3_HUMAN (Solute carrier family 13 member 3 OS=Homo sapiens GN=SLC13A3 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.266e-19
Identity = 40/102 (39.22%), Postives = 65/102 (63.73%), Query Frame = 2
Query:   20 IVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLATGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPTLGAYVF 325
            ++ ++ A  TEF SN AT  + LP+L ++A  + VHPL LM+PG +G  F+F+L   TP N + F +GH+ ++DM++TGL + + G+  L+  M T    +F
Sbjct:  470 LITVVIAFFTEFASNTATIIIFLPVLAELAIRLRVHPLYLMIPGTVGCSFAFMLPVSTPPNSIAFASGHLLVKDMVRTGLLMNLMGVLLLSLAMNTWAQTIF 571          
BLAST of EY686996 vs. ExPASy Swiss-Prot
Match: S13A5_RAT (Solute carrier family 13 member 5 OS=Rattus norvegicus GN=Slc13a5 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.469e-18
Identity = 45/105 (42.86%), Postives = 67/105 (63.81%), Query Frame = 2
Query:   20 IVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLATGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPTLGAYVFGTD 334
            I+  I A+ TE TSN ATTTL LP+   +A+++ +HPL +M+P  + A  +F+L   TP N + F  GH+++ DM+KTGL + I GIA++   + T G  VF  D
Sbjct:  455 ILSCIVAMTTECTSNVATTTLFLPIFASMARSIGIHPLYVMIPCTLSASLAFMLPVATPPNAIVFAYGHLKVIDMVKTGLVMNILGIASVFLSVNTWGRAVFNLD 559          
BLAST of EY686996 vs. ExPASy Swiss-Prot
Match: S13A5_HUMAN (Solute carrier family 13 member 5 OS=Homo sapiens GN=SLC13A5 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.521e-18
Identity = 41/105 (39.05%), Postives = 68/105 (64.76%), Query Frame = 2
Query:   20 IVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLATGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPTLGAYVFGTD 334
            I+ L+ A+ TE TSN ATTTL LP+   +++++ ++PL +M+P  + A F+F+L   TP N + FT GH+++ DM+KTG+ + I G+  +   + T G  +F  D
Sbjct:  451 ILSLLVAVFTECTSNVATTTLFLPIFASMSRSIGLNPLYIMLPCTLSASFAFMLPVATPPNAIVFTYGHLKVADMVKTGVIMNIIGVFCVFLAVNTWGRAIFDLD 555          
BLAST of EY686996 vs. ExPASy Swiss-Prot
Match: S13A4_HUMAN (Solute carrier family 13 member 4 OS=Homo sapiens GN=SLC13A4 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.770e-17
Identity = 37/105 (35.24%), Postives = 66/105 (62.86%), Query Frame = 2
Query:   20 IVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLATGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPTLGAYVFGTD 334
            + C++ +I+TEF SN AT T+ LP+L  +++T+H++PL  ++P  +   F+ +L  G P N + F+ GH +I+DM+K GL + + G+  +   + T G  +F  D
Sbjct:  507 LACILVSIVTEFVSNPATITIFLPILCSLSETLHINPLYTLIPVTMCISFAVMLPVGNPPNAIVFSYGHCQIKDMVKAGLGVNVIGLVIVMVAINTWGVSLFHLD 611          
BLAST of EY686996 vs. ExPASy Swiss-Prot
Match: S13A5_MOUSE (Solute carrier family 13 member 5 OS=Mus musculus GN=Slc13a5 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.053e-16
Identity = 42/103 (40.78%), Postives = 64/103 (62.14%), Query Frame = 2
Query:   26 CLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLATGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPTLGAYVFGTD 334
            CL+ A+ TE TSN ATTTL LP+   +A+++ +HPL +M+P  + A  +F+L   TP N + F  GH+ + DM+KTGL +   GI ++   + T G  +F  D
Sbjct:  458 CLV-AMTTECTSNVATTTLFLPIFASMARSIGIHPLYVMIPCTMSASLAFMLPVATPPNAIVFAYGHLRVVDMMKTGLIMNFVGILSVFLSVNTWGRAMFNLD 559          
BLAST of EY686996 vs. ExPASy Swiss-Prot
Match: S13A2_RAT (Solute carrier family 13 member 2 OS=Rattus norvegicus GN=Slc13a2 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.375e-16
Identity = 43/111 (38.74%), Postives = 65/111 (58.56%), Query Frame = 2
Query:    2 PRPTRPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLATGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPTLGAYVFGTD 334
            P  T  I+CL+ AI TE TSN ATTTL LP+L  +A+ + +HPL +M+P  + A  +F+L   TP N + F+ G +++ DM + G  L I G+ A    + +    +F  D
Sbjct:  451 PSATAVILCLLIAIFTECTSNVATTTLFLPILASMAQAICLHPLYVMLPCTLAASLAFMLPVATPPNAIVFSFGGLKVSDMARAGFLLNIIGVLATTLSINSWSIPIFKLD 561          
BLAST of EY686996 vs. ExPASy Swiss-Prot
Match: S13A2_RABIT (Solute carrier family 13 member 2 OS=Oryctolagus cuniculus GN=SLC13A2 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.224e-16
Identity = 40/108 (37.04%), Postives = 65/108 (60.19%), Query Frame = 2
Query:    2 PRPTRPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLATGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPTLGAYVF 325
            P  T  I+CL+ A  TE TSN ATTTL+LP+L  +A+ + +HPL +M+P  + +  +F+L   TP N + F+ G + + DM + G+ L I G+  +   + + G  +F
Sbjct:  459 PPATVFIICLLVATFTECTSNAATTTLLLPILASMAQAICLHPLYVMLPCTLASSLAFMLPVATPPNAIVFSFGGLRVSDMARAGIMLNIIGVLVIMLAINSWGVPMF 566          
The following BLAST results are available for this feature:
BLAST of EY686996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
TDT_ARATH1.319e-4379.82Tonoplast dicarboxylate transporter OS=Arabidopsis... [more]
S13A3_MOUSE1.569e-2040.20Solute carrier family 13 member 3 OS=Mus musculus ... [more]
S13A3_RAT7.789e-2039.22Solute carrier family 13 member 3 OS=Rattus norveg... [more]
S13A3_HUMAN2.266e-1939.22Solute carrier family 13 member 3 OS=Homo sapiens ... [more]
S13A5_RAT1.469e-1842.86Solute carrier family 13 member 5 OS=Rattus norveg... [more]
S13A5_HUMAN9.521e-1839.05Solute carrier family 13 member 5 OS=Homo sapiens ... [more]
S13A4_HUMAN2.770e-1735.24Solute carrier family 13 member 4 OS=Homo sapiens ... [more]
S13A5_MOUSE1.053e-1640.78Solute carrier family 13 member 5 OS=Mus musculus ... [more]
S13A2_RAT1.375e-1638.74Solute carrier family 13 member 2 OS=Rattus norveg... [more]
S13A2_RABIT5.224e-1637.04Solute carrier family 13 member 2 OS=Oryctolagus c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-031-G07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY686996 ID=EY686996; Name=EY686996; organism=Citrus sinensis; type=EST; length=544bp
TCCTCGACCCACGCGTCCGATCGTATGTCTGATTAGCGCGATTATTACTG
AATTCACATCAAATAATGCCACAACAACTCTCGTTCTTCCACTTCTGATC
CAAATAGCAAAAACTATGCATGTTCATCCATTGCTTCTTATGGTTCCTGG
AGCAATTGGAGCACAATTTTCTTTCTTGTTAGCGACTGGAACCCCTTCAA
ATATTGTTGGATTCACAACCGGGCACATCGAAATTCAAGATATGATCAAG
ACAGGGCTGCCCCTTAAGATTGCTGGCATTGCTGCTCTGGCCTTTCTAAT
GCCTACGCTTGGTGCTTATGTTTTTGGGACAGATGGGGATGTTCAGTAGC
TGCAAACTCTTGTAAACTGTGGAGGTTTCTCTCAATCAAGTCTCCGTAAC
AGGCATTGGGGGACCCTGAATAGGAATTATAGCAATGCTAGTGTTTGATG
AGATGATGATAAAAATTGATGCTTTTCCTATAAGAAAAGACGCCTATTGT
ATATTTGCGTGCCTAATGAATGCTTCCCTTAGTGGTTAGCACNC
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