EY686982

Overview
NameEY686982
Unique NameEY686982
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY686982 vs. ExPASy Swiss-Prot
Match: TMVRN_NICGU (TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.554e-20
Identity = 35/96 (36.46%), Postives = 62/96 (64.58%), Query Frame = 3 
Query:   15 VYKVEKLDDDEALELFNERAFDGQ-PSKDYVELIKRIVKYADGLPFALETLGSVLFGRSVDEWRSTLERLNKHSADEILDVLEISFNGLKGRIEIM 299
            +Y+V  L D E+++LF + AF  + P++++ +L   +V YA GLP AL+  GS+L    + EW+S +E +  +S   I+D L+IS++GL+ + + M
Sbjct:  342 IYEVTALPDHESIQLFKQHAFGKEVPNENFEKLSLEVVNYAKGLPLALKVWGSLLHNLRLTEWKSAIEHMKNNSYSGIIDKLKISYDGLEPKQQEM 437

HSP 2 Score: 35.039 bits (79), Expect = 2.554e-20
Identity = 20/51 (39.22%), Postives = 31/51 (60.78%), Query Frame = 1 
Query:  391 QIWMHDLLQ*MGQ*IVRRKSPEEPGKCSRLCKVADVSRVLRKNTELKQLKA 543
            Q+ MHDL+Q MG+ IV  +  ++PG+ SRL    +V  V+  NT    ++A
Sbjct:  484 QVQMHDLIQDMGKYIVNFQ--KDPGERSRLWLAKEVEEVMSNNTGTMAMEA 532

HSP 3 Score: 32.7278 bits (73), Expect = 2.554e-20
Identity = 12/39 (30.77%), Postives = 26/39 (66.67%), Query Frame = 2 
Query:  278 KGEDRDHVTKFLDGWGVDPVMGIGVLIDKSLISVLDNNK 394
            +GE++D++ + L+   +    G+ +LIDKSL+ + + N+
Sbjct:  446 RGEEKDYILQILESCHIGAEYGLRILIDKSLVFISEYNQ 484
The following BLAST results are available for this feature:
BLAST of EY686982 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TMVRN_NICGU2.554e-2036.46TMV resistance protein N OS=Nicotiana glutinosa GN... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-031-F04-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY686982 ID=EY686982; Name=EY686982; organism=Citrus sinensis; type=EST; length=865bp
CCACGCGTCCGGGAGTGTATAAGGTTGAGAAATTAGATGATGATGAAGCT
CTTGAACTCTTCAACGAAAGAGCATTTGATGGCCAGCCCTCAAAAGACTA
TGTTGAGCTGATCAAACGTATTGTAAAATATGCTGATGGTCTTCCATTTG
CTCTTGAAACTTTAGGTTCCGTTTTGTTTGGTAGATCTGTGGATGAATGG
AGAAGTACTCTGGAAAGACTAAATAAACATTCTGCAGATGAAATTCTGGA
TGTACTTGAAATTAGCTTTAATGGACTAAAGGGGAGGATAGAGATCATGT
AACAAAATTTTTGGATGGATGGGGTGTCGACCCTGTTATGGGAATAGGTG
TTCTTATTGACAAATCTTTGATAAGTGTTCTAGATAACAACAAATTTGGA
TGCATGATTTATTACAATAAATGGGACAATAAATTGTTAGGAGGAAATCC
CCTGAGGAGCCTGGGAAATGCAGCAGATTGTGCAAGGTAGCAGATGTAAG
TCGTGTGCTGAGAAAAAACACAGAACTGAAGCAGTTGAAGGCATCATGCT
TGATTTTTCTAATGAAGAGGGGGATTTGACTGCAAGTGCTAAGGCCTTTC
TGAAAATGACCAACCTAAGACTGCTTAAAATCCTTAATTTGCAACTTCCT
TGCGGGCCTGGATCTCTTTCTGGCGAATTACAATTACTTCAATGGCATGG
ATATCCCTTAAAATCCCTTGCCTTCCAGGAAGGAAAAGGGACAAAACTTT
GGGAATGTAACAGGGGGTATTCCGCGCATTGGAGCAATTTTGGGAAGGGA
ATCCGACCCCGAGGCGAAAGTGGGAATTAGAAGAATAATGGACCTTCCAA
AGAAACCTTAATCAA
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