EY686972

Overview
NameEY686972
Unique NameEY686972
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY686972 vs. ExPASy Swiss-Prot
Match: GLGB_MAIZE (1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic OS=Zea mays GN=SBE1 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.913e-26
Identity = 53/83 (63.86%), Postives = 68/83 (81.93%), Query Frame = 1
Query:  103 VVFERGNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYA 351
            +VFE+G+LVFVFNFH N+SY DYR+GC KPG YK+VLDSD  LFGG+ R+ H AE+F+ +  +D++P+SF VY PSRT VVYA
Sbjct:  714 IVFEKGDLVFVFNFHCNNSYFDYRIGCRKPGVYKVVLDSDAGLFGGFSRIHHAAEHFTADCSHDNRPYSFSVYTPSRTCVVYA 796          
BLAST of EY686972 vs. ExPASy Swiss-Prot
Match: GLGB_MOUSE (1,4-alpha-glucan-branching enzyme OS=Mus musculus GN=Gbe1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.829e-20
Identity = 45/87 (51.72%), Postives = 62/87 (71.26%), Query Frame = 1
Query:  100 SVVFERGNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYALAD 360
            ++ FER  L+F+FNFH + SY+DYRVG   PGK+KIVLDSD   +GG++RLDHN  YF+    ++ +P+S LVY PSR A++    D
Sbjct:  613 TITFERAGLLFIFNFHPSKSYTDYRVGTATPGKFKIVLDSDAAEYGGHQRLDHNTNYFAEAFEHNGRPYSLLVYIPSRVALILQNVD 699          
BLAST of EY686972 vs. ExPASy Swiss-Prot
Match: GLGB_HUMAN (1,4-alpha-glucan-branching enzyme OS=Homo sapiens GN=GBE1 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 9.076e-20
Identity = 44/86 (51.16%), Postives = 62/86 (72.09%), Query Frame = 1
Query:  103 VVFERGNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYALAD 360
            + FER  L+F+FNFH + SY+DYRVG   PGK+KIVLDSD   +GG++RLDH+ ++FS    ++ +P+S LVY PSR A++    D
Sbjct:  614 IAFERAGLLFIFNFHPSKSYTDYRVGTALPGKFKIVLDSDAAEYGGHQRLDHSTDFFSEAFEHNGRPYSLLVYIPSRVALILQNVD 699          
BLAST of EY686972 vs. ExPASy Swiss-Prot
Match: GLGB_ORYSJ (1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SBE1 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 1.185e-19
Identity = 48/100 (48.00%), Postives = 68/100 (68.00%), Query Frame = 1
Query:  103 VVFERGNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAEYF-SLEGW-------YDDQPHSFLVYAPSRTAVVYALADEEEQPL 378
            +VFERG+LVFVFNFH N +Y  Y+VGC  PGKY++ LDSD  +FGG+ R+ H+ ++F S EG        ++++P+SF V +P RT V Y   DE+ + L
Sbjct:  666 IVFERGDLVFVFNFHPNKTYKGYKVGCDLPGKYRVALDSDALVFGGHGRVGHDVDHFTSPEGMPGVPETNFNNRPNSFKVLSPPRTCVAYYRVDEDREEL 765          
BLAST of EY686972 vs. ExPASy Swiss-Prot
Match: GLGB_HORSE (1,4-alpha-glucan-branching enzyme OS=Equus caballus GN=GBE1 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.548e-19
Identity = 44/86 (51.16%), Postives = 62/86 (72.09%), Query Frame = 1
Query:  103 VVFERGNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYALAD 360
            + FER  L+F+FNFH + SY++YRVG   PGK+KIVLDSD   +GG++RLDHN ++FS    ++++P S LVY PSR A++    D
Sbjct:  611 IAFERAALLFIFNFHPSKSYTNYRVGTTLPGKFKIVLDSDAAEYGGHQRLDHNTDFFSEPYEHNERPSSLLVYIPSRVALILQNVD 696          
BLAST of EY686972 vs. ExPASy Swiss-Prot
Match: GLGB_FELCA (1,4-alpha-glucan-branching enzyme OS=Felis catus GN=GBE1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.683e-19
Identity = 42/86 (48.84%), Postives = 61/86 (70.93%), Query Frame = 1
Query:  103 VVFERGNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYALAD 360
            + FER  LVF+FNFH + SY+DYRVG   PGK++IVLD+D   +GG++RLDH+ E+FS    ++++P S LVY P+R  ++    D
Sbjct:  611 IAFERAGLVFIFNFHPSKSYTDYRVGTTLPGKFRIVLDTDAAEYGGHQRLDHSTEFFSQPFKHNERPCSLLVYIPNRVGLILQNVD 696          
BLAST of EY686972 vs. ExPASy Swiss-Prot
Match: GLGB_YEAST (1,4-alpha-glucan-branching enzyme OS=Saccharomyces cerevisiae GN=GLC3 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 3.228e-17
Identity = 42/86 (48.84%), Postives = 62/86 (72.09%), Query Frame = 1
Query:  103 VVFERGNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYALAD 360
            +VFER NL+F+FNFH  +SYSDYRVG  K G Y IVL+SD   FGG+ R++ ++E+F+ +  ++++ +   VY PSR A+V AL +
Sbjct:  619 IVFERNNLLFIFNFHPTNSYSDYRVGVEKAGTYHIVLNSDRAEFGGHNRINESSEFFTTDLEWNNRKNFLQVYIPSRVALVLALKE 704          
BLAST of EY686972 vs. ExPASy Swiss-Prot
Match: GLGB_YARLI (1,4-alpha-glucan-branching enzyme OS=Yarrowia lipolytica GN=GLC3 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.733e-16
Identity = 42/88 (47.73%), Postives = 58/88 (65.91%), Query Frame = 1
Query:  103 VVFERGNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAEYFSLEGW-YDDQPHSFLVYAPSRTAVVYALADE 363
            VV+ER  LVFVFNFH N S++DYR+G  +PG Y +VLDSD P FGG+ R+DH       E   ++ + +   +Y PSR A+V+A  D+
Sbjct:  600 VVYERAGLVFVFNFHPNKSFTDYRIGVDQPGTYTLVLDSDSPEFGGFGRIDHEKTRCHTEPLEWNGRANCMHIYIPSRVALVFAREDD 687          
BLAST of EY686972 vs. ExPASy Swiss-Prot
Match: GLGB_CRYNE (1,4-alpha-glucan-branching enzyme OS=Cryptococcus neoformans GN=GLC3 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.154e-15
Identity = 37/84 (44.05%), Postives = 55/84 (65.48%), Query Frame = 1
Query:  103 VVFERGNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYAL 354
            +VFER  L+F+FNFH   S++DYRVG    G+YK++L SD+  FGG+ R+D    YF+    ++ + +   VY+PSRT +V  L
Sbjct:  599 IVFERAGLLFIFNFHPTQSFTDYRVGVDTAGEYKVILTSDETRFGGHNRIDMGGRYFTTPMEWNGRKNWLQVYSPSRTVLVLGL 682          
BLAST of EY686972 vs. ExPASy Swiss-Prot
Match: GLGB_DICDI (1,4-alpha-glucan-branching enzyme OS=Dictyostelium discoideum GN=glgB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.731e-15
Identity = 38/86 (44.19%), Postives = 58/86 (67.44%), Query Frame = 1
Query:  103 VVFERGNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYALAD 360
            +VFER +L+F+FNFH + S+SDYR+G   PGK+  VLDSD   FGG+ R+  +  +++ +  + D+ +S L+Y PSRT +V    D
Sbjct:  593 IVFERASLIFIFNFHPSKSFSDYRIGSGVPGKFINVLDSDRKEFGGHVRIGKDNYHYTEDKPWHDRKYSLLIYIPSRTCLVLKKVD 678          
The following BLAST results are available for this feature:
BLAST of EY686972 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
GLGB_MAIZE2.913e-2663.861,4-alpha-glucan-branching enzyme 2, chloroplastic... [more]
GLGB_MOUSE1.829e-2051.721,4-alpha-glucan-branching enzyme OS=Mus musculus ... [more]
GLGB_HUMAN9.076e-2051.161,4-alpha-glucan-branching enzyme OS=Homo sapiens ... [more]
GLGB_ORYSJ1.185e-1948.001,4-alpha-glucan-branching enzyme, chloroplastic/a... [more]
GLGB_HORSE1.548e-1951.161,4-alpha-glucan-branching enzyme OS=Equus caballu... [more]
GLGB_FELCA7.683e-1948.841,4-alpha-glucan-branching enzyme OS=Felis catus G... [more]
GLGB_YEAST3.228e-1748.841,4-alpha-glucan-branching enzyme OS=Saccharomyces... [more]
GLGB_YARLI2.733e-1647.731,4-alpha-glucan-branching enzyme OS=Yarrowia lipo... [more]
GLGB_CRYNE5.154e-1544.051,4-alpha-glucan-branching enzyme OS=Cryptococcus ... [more]
GLGB_DICDI6.731e-1544.191,4-alpha-glucan-branching enzyme OS=Dictyostelium... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-031-E01-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY686972 ID=EY686972; Name=EY686972; organism=Citrus sinensis; type=EST; length=917bp
CGGGCGGGGGNNTAAACCCCGCCCCCTTCTATCACGGGCGGCTCAGCCCN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCCGACCCACGCGT
CCGTAGTCTTTGAAAGAGGAAATCTTGTTTTCGTCTTCAACTTTCATTGG
AATAGTAGTTATTCCGACTATCGTGTGGGCTGCTTGAAGCCAGGGAAGTA
TAAGATTGTCTTGGATTCAGATGATCCACTGTTTGGAGGCTACAAAAGGC
TCGACCACAATGCCGAGTACTTCAGCTTGGAAGGGTGGTATGATGACCAA
CCTCATTCCTTCTTGGTATATGCGCCAAGCAGAACGGCTGTGGTCTATGC
TCTAGCAGATGAAGAAGAGCAACCTCTTAATGTATAAAATTAAATAACCA
TCAGGTTCTATTTAATATGGGAGTTTCGAGAGATCTCCTTGCTGTGCATC
AGCATTCCACTTACCAATCTTGAGAATAAAAGTACAGTGAGAGACTCGTT
GAATTACCCTTTCTGGTAATTTTTGCATCACATAAATTGGGGAGGTCAGG
ATGAACACCCACGAGAGGACAACCTGCATGCAACATTGCAATTTCATGCC
GAAGAATTGGAGACCAATACCGGGGTAAAAAGGTTTCCCGGCGACATGGG
GGAAAATGGGTTCCTGGTTCCGTAAATCGGACCGAGATTGGGAGAATAAA
TGCCGTAACCGGCACAAAGAAGGCGTCCGCGTGTGCGTGCAGGAACAGTG
GGCGCGGGGGGCGGGCGCGGACGCGATGAGGCACCGTGTTGCGCAACCAG
CGGGAGCAAAGAATGTGCGAGAGCTCAGAGGGAGACGGGAGCCACCTCCA
GCCGAGGGCGGGAATTCGAGGGCGGGGGGGCGTGTTTTTGCTGATTCATA
TAACAATAAACCCACAA
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